Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01983 ATGAAGAACGTGATGGAGGCCACATCCTCTGTGTTTTGTGGGGATTCTGATTGTATCAATAGAGGAGTGGAATGTGGTTCTAGTTTTGACTATCTGGCTAATCCCTCTTCATGCATTTATCAAGCAATTGTCGTGTTCTTCAATGTTGTTCTTTTACTTGTGCTCGTGTTAGTAATGCTGAGAAGGAAATCATCGGTTTATATGTCTACCATTCGATTCCATAACCATTCGTATTGGGAAATTTGTGTAGTGCTTTTCAATGTCTGTCTCGGATTGACATATTTGGGCTTGGGAGTTTTGAAATTAGAAGAAAGTTGGAGGAAAATGGACACTGCTCTGCCTCTGAGTTTATGGTTCTCGACGGTTTTTCAGGGTTTGACTTGGATTCTGGTAAATATAATCATAATTACTCGAGGCAAACAGCTTCCGGGAGCAATTCTTCGCCTTTTGTCTGTGCTTGCAGTTGCATTTTCTGCCATAATTTGTGCTTTATCACTGGCTTCTTTCATGGCCAGCAAGGTTTTATCATTGAAGATAGCTTTGAATGTTTTATCTTTTCCAGGAGCTTTTCTCTTGATGATTTTAACTTATAAGATGTCCAAATTTGAAGCCAGTGAGTTGAGTTTGGAGGAAAAGGACCTCTATACGCCTTTGAACGGCGAGGTGAATAGAACTAGCACTATAGATCCTGTCACTCCGTTTGCTAAGGCCGGATTCTTTAGCCAAATGTCGTTTTGGTGGTTGAATTCTTTGATGAAAAGAGGAACAGAAAAAACTCTTGAGGACAAAGATATTCCTAAACTACGCCAAAACGATCGAGCAGAGAGTTGTTATATGAAGTTCTTAGAAAAATTGAACAAGCAAAAACAAATAGAACCATCGTCGCAGCCGTCGATCTTGAGGACAATAATCCTATGCCATTGGAAGGAGATTTTACTATCCGGGTTCTTTGCACTTTTGAAGATTCTCACTGTCTCTGCAGGTCCTCTTCTTCTCAATGCCTTCATTTCAGTTGCAGAAGGAAAATCGAGCTTTAAATATGAAGGCTATGTTCTTGCCGTGTCTCTTTTTCTCTCGAAGAGCATCGAATCCTTTTCGCAAAGACAGTGGTATTTTAGGAGCAGGCTTATAGGTCTTCAAGTCAGGTCTTTACTCACAGCTGCCATTTACAAGAAGCAATTGAAATTATCAAATGCTGGAAAGTTGATCCATTCAGGAGGCGAGGTTATGAATTATGCGACAGTCGATGCCTATCGAATCGGAGAATTCCCATATTGGTTCCATCAAACTTGGACGACGAGCTTGCAGCTCTGCATTGCACTTGTAATTCTATTCCGTGCCGTTGGGTTGGCGACGATTGCAGCTTTAATCACGATTGTTCTATGTGTTCTTTGCAATGCCCCCATCGCTAAATTGCAGCTCAAATATCAGACCAAGCTCATGCTGGCCCAAGACGAGAGGTTGAGAGCTTGTAATGAAGCTCTTATCAACATGAAAGTTCTTAAATTATATGCATGGGAGACTCATTTCAAACAAGCGATCGAGAAATTGAGGAAAAACGAGTGCAAATGGTTGTCGGGAGTGCAGCTTCGAAAGTCTTATAATGGCTTTCTCTTTTGGACATCTCCTGTTTTGGTTTCGGTTGCTACCTTTGGAGCTTGTTACTTCCTTAAAGTTCCTCTATATGCAAGTAATGTTTTCACCTTTGTTGCTACTTTACGGCTTGTTCAAGACCCGATTCGATCTATCCCTGATGTCATTGGAGTTGTCATTCAAGCTAAAGTTTCATTTGCTCGTATTTTGAAGTTTCTAAAGGCGTCTGAGCTTCATAGCACAAATGCTCGCCAAAAGTGGAACGCAGAGAGTTTAAGCCATGCCATTTTCATAAACTCAGCCGATTTTTCGTGGGAACAGAATTCCCTTAGGCCGACACTTAGGAATATTGATTTGGTCGTCAGGCCGAGCGAAAAGGTGGCTATCTGCGGCGAAGTTGGCTCAGGGAAATCGACTCTTCTTGCAGCGATTCTTGGTGAAATTTCAAAATTTAAAGGGGAAATTCAAGTTTATGGGAAGATAGCTTATGTTTCTCAAACGGCATGGATTCAAACGGGGACAATACAAGACAACATTCTATTCGGCACCGAGATGGATTCGCAAAGATATCAAGAAACACTCGAGGTGTGTTCGTTGGTAAAGGATCTCGAGTCGTTTCCTTATGGCGATCTAACCGAAATAGGAGAAAGAGGAGTGAATCTTAGTGGTGGTCAAAAGCAGCGGATTCAACTTGCTCGAGCTCTATATCAAGATGCTGACATTTACCTCTTGGACGATCCGTTTAGTGCCGTTGATGCTCATACTGCGACGAATTTGTTCAATGATTATGTTATGAAAACACTTTCGGGAAAGTCCGTTCTGCTTGTGACTCATCAAGTTGATTTCCTACCGACATTCGATTCTGTTTTGTTAATGTCAGATGGAGAAATCCTACAAGCTTCTTCCTACCATCAATTATTAGCTTCAAGTAAAGAATTCCAAGAACTAGTCAATGCACACAAGGAGACTGCCGGGACTGAACGGCTCGCAGATGTTACTTCTACCCAAAATAGGGAAACACCTTCTCGAGAGATTAAGATGACTTTCATGGAGAAAAAAGTAACATCCTCCAATGCCGATCAATTAATTTTGAAAGAAGAAAGAGAAATAGGAGACACTGGATTCAAGCCTTACATTCAGTATCTGAATCAGAACAAAGGGTTCTTGTATTTTTCCTTATCCATCCTCGCTCATCTTATATTCGTGATTGGACAGACTTCGCAAAACTATTGGATGGCATCCAACGTCGACAATCCGAACGTCACCCCATTGCATTTGATCGTAGTTTACTTGGTGATTGGAGTCTCTTCAACCGTTTTCTTATTGATTCGATCTCTCTCTTCTGTGACTTTAGGCCTTCAATCGTCAAAGTCATTGTTCTCTCAACTCTTAAACTCTCTTTTTCGGGCTCCTATGTCGTTTTACGACTCCACGCCCATTGGAAGAATACTTAGCCGGGTATCATCTGATCTAAGTGTGGTTGATCTCGATGTACCATTCGCTTTTGTTTGGGCCAGTGGGGCCACCATTAATGCTTATGCAGGTCTTGCAGTGTTAGCCGTCGTAACGTGGCAAGTTCTCTTCGTCTCCATTCCGATGCTTTTTATCTCCATGCGCTTGAAGAGATATTACTTTGCCTCAGCTAAAGAATTGATGCGTATTAATGGCACGACCAAATCGTTAGTAGCCAATCATCTGGCCGAGTCTGTGGCGGGGGCGATGACGATTCGAGCTTTCGAAGAAGAAGATAGATTTTTTGCGAAAAACCTCCACCTCATTGACGTAAACGCGAGTCCTTTCTTCCACAATTTCTCGGCAACCGAGTGGTTGATTCAACGACTAGAAATGCTCAGTGCCACCATTCTCACCTCTGCTGCACTTGCCATGGTTTTGCTTCCTCCTGGAACCTTCAGCCCTGGATTCATTGGAATGGCACTTTCTTATGGACTTTCTCTCAACATGTCTTGGGTTTTTTCCATACAAAATCAATGCACTTTGGCAAATTACATCATCTCTGTTGAAAGAGTAAACCAATATATGCATATACCCAGTGAAGCTCCAGAAGTGATCGAACAAAACCGTCCGCCTAGCAGTTGGCCTTCTGTCGGCAAAGTGCAAATACTTGATTTGCAGATTCGATATCGGCCTAATGCGCCTCTCGTTCTTCGTGGGATTAGCTGCACATTTGAAGGCGGTCATAAGATAGGGATCGTCGGCCGGACTGGCAGTGGGAAGACTACTCTTATTGGAGCTCTATTTCGGTTGGTGGAGCCTGCTGGAGGAAGGATAATTGTCGATGGGATTGACATATGCACGATCGGACTTCATGATCTAAGATCCCGATTCGGAATTATACCTCAAGATCCAACCCTTTTCAATGGAACTGTTAGATATAATTTGGACCCCTTGTCCCAACATTCCGACCAGCAATTGTGGGAGGTTCTCGGAAAGTGTCAGCTCCGAGAAGCGGTGCAAGAGAAAGGTGGCTTGGACTCACCAGTTATGGAAGAAGGTTCAAATTGGAGCATGGGGCAGAGACAGTTGTTCTGTTTAGGCCGCGCCCTCTTGAGAAGAAGTCGTATATTGATACTCGATGAAGCGACTGCTTCAATCGACAACGCGACCGATATGATTTTGCAGAAAACGATTCGATCGGAATTTGCAGATTGTACTGTAATCACAGTCGCTCATCGGATTCCGACGGTGATGGATTGCACGATGATTCTTGCCATCAGTGATGGTGACATTGTCGAGTACGATGAGCCGAAGAAGTTGATGAAGAGGGAAGATTCACTGTTCGGACAGCTGGTGAAAGAATACTGGTCTCATTCTCAGACAGCTGAATTAATATGA 4446 42.85 MKNVMEATSSVFCGDSDCINRGVECGSSFDYLANPSSCIYQAIVVFFNVVLLLVLVLVMLRRKSSVYMSTIRFHNHSYWEICVVLFNVCLGLTYLGLGVLKLEESWRKMDTALPLSLWFSTVFQGLTWILVNIIIITRGKQLPGAILRLLSVLAVAFSAIICALSLASFMASKVLSLKIALNVLSFPGAFLLMILTYKMSKFEASELSLEEKDLYTPLNGEVNRTSTIDPVTPFAKAGFFSQMSFWWLNSLMKRGTEKTLEDKDIPKLRQNDRAESCYMKFLEKLNKQKQIEPSSQPSILRTIILCHWKEILLSGFFALLKILTVSAGPLLLNAFISVAEGKSSFKYEGYVLAVSLFLSKSIESFSQRQWYFRSRLIGLQVRSLLTAAIYKKQLKLSNAGKLIHSGGEVMNYATVDAYRIGEFPYWFHQTWTTSLQLCIALVILFRAVGLATIAALITIVLCVLCNAPIAKLQLKYQTKLMLAQDERLRACNEALINMKVLKLYAWETHFKQAIEKLRKNECKWLSGVQLRKSYNGFLFWTSPVLVSVATFGACYFLKVPLYASNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVSFARILKFLKASELHSTNARQKWNAESLSHAIFINSADFSWEQNSLRPTLRNIDLVVRPSEKVAICGEVGSGKSTLLAAILGEISKFKGEIQVYGKIAYVSQTAWIQTGTIQDNILFGTEMDSQRYQETLEVCSLVKDLESFPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATNLFNDYVMKTLSGKSVLLVTHQVDFLPTFDSVLLMSDGEILQASSYHQLLASSKEFQELVNAHKETAGTERLADVTSTQNRETPSREIKMTFMEKKVTSSNADQLILKEEREIGDTGFKPYIQYLNQNKGFLYFSLSILAHLIFVIGQTSQNYWMASNVDNPNVTPLHLIVVYLVIGVSSTVFLLIRSLSSVTLGLQSSKSLFSQLLNSLFRAPMSFYDSTPIGRILSRVSSDLSVVDLDVPFAFVWASGATINAYAGLAVLAVVTWQVLFVSIPMLFISMRLKRYYFASAKELMRINGTTKSLVANHLAESVAGAMTIRAFEEEDRFFAKNLHLIDVNASPFFHNFSATEWLIQRLEMLSATILTSAALAMVLLPPGTFSPGFIGMALSYGLSLNMSWVFSIQNQCTLANYIISVERVNQYMHIPSEAPEVIEQNRPPSSWPSVGKVQILDLQIRYRPNAPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGRIIVDGIDICTIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQQLWEVLGKCQLREAVQEKGGLDSPVMEEGSNWSMGQRQLFCLGRALLRRSRILILDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMILAISDGDIVEYDEPKKLMKREDSLFGQLVKEYWSHSQTAELI 1481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43164818 43170615 + Bma012791.1 Bma14g01983 95964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01983 1481 Gene3D ABC transporter type 1, transmembrane domain 281 608 IPR036640 GO:0005524|GO:0016021
Bma14g01983 1481 Gene3D ABC transporter type 1, transmembrane domain 884 1217 IPR036640 GO:0005524|GO:0016021
Bma14g01983 1481 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Bma14g01983 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 850 IPR003439 GO:0005524
Bma14g01983 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma14g01983 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 850 IPR027417 -
Bma14g01983 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 73 1479 - -
Bma14g01983 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1199 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma14g01983 1481 Pfam ABC transporter 1253 1400 IPR003439 GO:0005524
Bma14g01983 1481 Gene3D - 1219 1470 IPR027417 -
Bma14g01983 1481 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 73 1479 - -
Bma14g01983 1481 Gene3D - 622 856 IPR027417 -
Bma14g01983 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1467 IPR027417 -
Bma14g01983 1481 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524
Bma14g01983 1481 Pfam ABC transporter 645 779 IPR003439 GO:0005524
Bma14g01983 1481 CDD ABCC_MRP_domain1 629 827 - -
Bma14g01983 1481 Pfam ABC transporter transmembrane region 312 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma14g01983 1481 Pfam ABC transporter transmembrane region 919 1179 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma14g01983 1481 SUPERFAMILY ABC transporter transmembrane region 921 1216 IPR036640 GO:0005524|GO:0016021
Bma14g01983 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1469 IPR003439 GO:0005524
Bma14g01983 1481 SUPERFAMILY ABC transporter transmembrane region 300 600 IPR036640 GO:0005524|GO:0016021
Bma14g01983 1481 CDD ABCC_MRP_domain2 1234 1453 - -
Bma14g01983 1481 SMART AAA_5 1262 1453 IPR003593 -
Bma14g01983 1481 SMART AAA_5 654 827 IPR003593 -
Bma14g01983 1481 CDD ABC_6TM_ABCC_D2 918 1211 IPR044726 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01983 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - qsu:112020205 2194.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00514 Bma-Chr9:41616428 Bma14g01983 Bma-Chr14:43164818 0 dispersed
Bma13g00059 Bma-Chr13:714934 Bma14g01983 Bma-Chr14:43164818 0 dispersed
Bma13g00665 Bma-Chr13:16703600 Bma14g01983 Bma-Chr14:43164818 0 dispersed
Bma14g01879 Bma-Chr14:40248238 Bma14g01983 Bma-Chr14:43164818 5.26E-13 dispersed
Bma14g01983 Bma-Chr14:43164818 Bma14g01986 Bma-Chr14:43185372 1.06E-10 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g863 . . . . . . . Bma14g01983 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g01983 Bma_Chr14 FPKM 18.471138 20.979753 14.356865 13.758079 23.142065 23.528572 22.708111 13.971939 11.669622 12.85402