Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02004 ATGTCCTCCACGCTGCTCGAGGTGACGCGCGCAGCGCATGAGGAGGTGGAGCGCTTGGAGCGAAACGTGGTGAAGGAGCTCCAGAATGATCCTGCTTCTAGTCGGGATCGCTTGCTTCAGAGCCATCGTGTGCGGAGTATGATAGACACTATCACTTCTACTACTGAGAAACTTGTTGAGATATATGAGGATAAAGATAATGCGAGAAAGGATGAGATAGGAGCCCTTGGGGGCCAAACTGCAACTGGAACCAACGTGTTTAGTGCATTTTATGATAGGTTGAAGGAGATTCGTGAGTACCACAGAAGGCATCCTGCTGCACGTGTTGTTGATTCAAATGACGATTATGAGATGCAACCTAAAGAGGAGCCACAAACTGAATTCAGCGGAGAGGAAGGATTTGGACGGTATCTTGACTTGCATGAATTGTACAACGAGTACATCAATTCTAAGTTCGGAGAGCCAATTGAGTATTCTGCTTACCTTGATTTGTTTTCTCAGCCACATAAGATTCCCAATAAACTAAAGTCAACCAACAAATATAAAGATTATGTGGCGAATCTACTCGAGTATTTAATATACTTTTTCCACCGTACTGAGCCTTTGCAAGATCTTGATAAAATATTTTCCAAGGTTGAAACTGAATTTGATGACCGATGGGTGAATGGCACAGTGGAGGGGTGGGAGAGTGCTAGTCAAGAAAATGGAAAAATAGCTCAACATACTGTTATTGATCTTGACTATTACAGCACGATCGACGAGCTGATTGAATTAGGTCCTGAAAAGCTGAAGGAGGCACTGGCTGCATTGGGACTGAAGACAGGTGGTACTGTCCAGCAGCGAGCAGAGAGGCTTTTCCTTACTAAGCATACCGCTCTTGAAATGTTGGATAAGAAACATTTTGCTAAAGTTCCCCGTGGTTCAGAACAAAATGGAGTTCCTGTGGCTTCACATTGTAATGAAAATTTGAAAGAAGTTGCCTTGATGGAAGCCAAAATTGAAAAACTAAGTGACTTATTGGATGAGACAATTGAGCGAACAAAGGACAACATCATGAAAAAGCAATCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAGGCTGACACAGATACTGATGATGAGGAGCAACAAATTTATAATCCTCTGAAACTTCCAATGGGTTGGGATGGGAAACCTATACCTTATTGGCTGTACAAACTTCACGGTCTTGGTCAGGAGTTTAAATGTGAGATATGTGGGAACTATAGCTACTGGGGCCGTAGAGCTTTTGAACGACATTTCAAAGAATGGCGTCACCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTCAATGAAGTAACATCAATTGAGGAAGCGAAAGACTTGTGGAAGAAAATACAAGAGCGGCAAGGAGTGAACAAATGGCGGCCAGATCTTGAAGAAGAGTATGAAGATAAAGAGGGTAACATCTACAACAAAAAGACTTTACTGATCTCCAGCGCCAGGGATTGA 1521 42.87 MSSTLLEVTRAAHEEVERLERNVVKELQNDPASSRDRLLQSHRVRSMIDTITSTTEKLVEIYEDKDNARKDEIGALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVDSNDDYEMQPKEEPQTEFSGEEGFGRYLDLHELYNEYINSKFGEPIEYSAYLDLFSQPHKIPNKLKSTNKYKDYVANLLEYLIYFFHRTEPLQDLDKIFSKVETEFDDRWVNGTVEGWESASQENGKIAQHTVIDLDYYSTIDELIELGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTALEMLDKKHFAKVPRGSEQNGVPVASHCNENLKEVALMEAKIEKLSDLLDETIERTKDNIMKKQSLTYEEIEAEREEEETQADTDTDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEVTSIEEAKDLWKKIQERQGVNKWRPDLEEEYEDKEGNIYNKKTLLISSARD 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43443057 43449102 + Bma012813.1 Bma14g02004 95985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02004 506 Coils Coil 352 379 - -
Bma14g02004 506 Coils Coil 9 29 - -
Bma14g02004 506 MobiDBLite consensus disorder prediction 359 381 - -
Bma14g02004 506 MobiDBLite consensus disorder prediction 362 381 - -
Bma14g02004 506 Pfam Replication stress response SDE2 C-terminal 224 303 - -
Bma14g02004 506 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bma14g02004 506 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Bma14g02004 506 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 174 IPR031774 -
Bma14g02004 506 Pfam SF3a60/Prp9 C-terminal 389 498 IPR024598 GO:0000398|GO:0003723|GO:0005681
Bma14g02004 506 PANTHER SPLICING FACTOR SF3A-RELATED 1 499 - -
Bma14g02004 506 PANTHER BNAA03G01920D PROTEIN 1 499 - -
Bma14g02004 506 Coils Coil 326 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01098 Bma-Chr2:52673802 Bma14g02004 Bma-Chr14:43443057 5.46E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02004 K12827 - zju:107414800 811.601