Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02007 ATGGTGCCGAGCAATGTTGAAAAGGAGGTGGGAGTTTTAGACCTGGCAGAGAAAAAAAGGAACTTCGGGAATCTTATGATTGGTGGAATTGGCAGCGTCATTGAAGTAGATGGCCAGAGAGAAACCGCAAAAATACCATGTAGTATAGAAAATATGGAAACTGAAGACGTGAATCTTGGAGGAGAAGGAATTATTGGTCATTATGGTGGATCTTGTGGAATTTCAAGAGAGAATGGTGGTCGAAACTTTGTTGGTGATGAAAGTACTCTTCAGTTATGGAGCGGTGAAGATTCTTGTTTCTATAATGGCGGCGAAGTCGGGGTTGGTGCTTCTGGCGAAGCTCATTTTGAAAAATTTGAACACGGGTTTGGAGAAGTAGTCAAGGTCGGTGGGTCTGTTAGTGAAGCTGATTTTGGCCTTTGTGGTGGAAGAATCAGGGCAATATTTGGTGAAACTAGGGACAGAAATGACAGTCTGAGCCATGATGAGGAACGGTTTCAAGATGTTTTTGGTCAAGTAAATGGTGTGAAGTGGGACCTGAATTTGGGATGGTGTACAGATATTGGTAATCAACCAGCTCCGATATTGCCTGGTGAACATGAATCGGCTAATCGAGGTCAACGAACCCTATTTGATGATTATGGGGGAAGAAGTGGAACAGAAGTGGCGATCAGTTTGGGAAAAAAGCGTGGGAGGCCAAAGGGATCGAAAAATAGATCGAAATTAGTCTGTGCAGAAGAGAAGAAAATAGGGACTGAACTTGCAAAAAGTAGTGTGAGGGAACATGGAAAGCGAGGTCGGCCAAAGGGCTCGAAGAACAAGAAGAAAACTCAGACAAACGGTGGAGTTCAGGGACTTTTTATTCAAGTCAATGGTGGAAATGACACAGAGACAATGGCGTTGAGCTGTAGGACTGCAAGTTTTCAAGGTGGTGATTCCATTGATTGTAAAAGTGTGACTCTTTCGCCAAATTTTAAGCATGGTCGTGGTCGTCCCAAAGGTTCAAAAAATAAGAAAAAACTTCTTGGTTGCGAAAACAGCAAAGTTGCTTGTGAGATTGAGGCAGCAAGTGAACGTGGTGAAAAAGAAACATTTTTGACCGTAAGGCCAACCTTCGCTGTCGAGAATGATGTGAGACTACCTTGCACAGGCACTGGCGGTAATGAAGGGGGAAATGAGATGGTCATGCCTAAGAGGAAGCCCGGTAGACCAAAGGGTTATAAGAAAAGTTTTATAGGTGGAGAGTGTGGGAACAAATCTCTTGCTTCTAAAGATGGTGATTATGGCAGTATTCATCTCCCTAGTTTGGATAATCTACCATTTGGAACATATCCCTCTGTTCCAATTGGTGTTAATGAAAATGAAACCAAGACTGTTCAGCCAAGTAGAAAGCGGGGGCGGGGAAGGCCAGTGGGTTCTAATAGTAAGAAGAAACACCCCTGGATGTCTGAGGGAAATCTAGTTGCTCGTAACTGTATTGATATTTTGCAACTCAGGTTGGAGAGTGACAGTGAATCCCAAACAATGGCGAAAGTCTTTGGTGAGAATGTGCTGTCAGAAAACAAGCGTGGTCGGCCCAAGGGTTCAAAGAATAAGAAAACATTAGTTTCAGGTAAAAACATTTCCATGTCGCCTTGTATAATGAGGTATCAAGGAATGTTTGATGAAGTGACTTGTGGAAATGCTGGTGGAAACAAGTTTGCCGAGCCAGAATATAAGTGTATCCAAGCTACTGAGGATATGATCAGGAAGGAAGAAAAGATCACTGATAAAGATCATGAGACTTTGAAACAGAGGGACAAAAAGGAAAATGTAGATGAGAGTTCGACATACAAACTAAGAAGCAGAACGATTAGTTCAAAAAGTTTTCCAGGTGCAAAAGAGGAAGTTGCTAGTTTGAAAAAGAAGTGGCGGAATTTAATGTGCCATCAATGTAGGAATGACAGAAGTGGTGTAATCGAATGTCCCAAGTGCAAACGGAAACGTTATTGCTATTCGTGCCTCCAAAAATGGTACCCTCAATTAGAGAGTGAAGGTCTGAAGAAGGGTTGTCCATTTTGTCGTGGCTTCTGCAATTGCAGCATTTGTCTGAATAAGAATTTTGTTGTAAAGGCTCTGAGTGAACAACCAGACAAAAATGTAAGACTGAAGAAGTTGCTTCATGTGCTATACTATACTCTGCCTCTTCTCAGACATGTTCAATGGGAGCAAAAGGCAGAATTAGATATTGAATCAAGCGTCCTTGGAATTGTTTTGACTGAAGAGGATGTAATAAAGGCTGTTCTTGATGACGATGATCGTATTTATTGTGACAACTGCAGCACCTCCATTGTGAATTTCCATAGAAGCTGCTCCAATCCTGAATGTTCTTATGATCTCTGCCTCACTTGTTGTCGGGAATTAAGAGAAGGATTTTGCAAGGGAGGTAGTAAGAAAGAAGAAGCTCTTGACCAGGAATTTTCCCAAATATCACACGGCCAAGAATGGAAAGCAGAGGTGGACGGGAGGATTTTCTGCCCACCAAGCATGCAGGGTGGTTGTGGTTCAAAGGAGTTTATTTTGAGGCGGATCTTTGAAGCCAACTGGATTGAAAAGCTAATTTCGAGTGCAGAAGATCTGACTGTAAATTATAAGTCCCCACTTCCTCATTTTTCTCAAGTTTGTACTTTGTGCCATTCTAAAGGTTCTGTAGAGAAAAACAGTAGCTCAGAAAATGGAGTAGAAATTTGTGAAGCCAGGCAAGCAGCTGATAGAGAGAACAGCAATGATAACTATCTGTACTGCCCAGATGCTGTTCTCTTGAAAGACAATGACATCGAACATTTTCAAATGCATTGGTCCAGAGGAAATCCCATTATAGTTCGTAATGTACTTGAAAATGCTTCTGGTCTTAGCTGGGAACCCATGGTAATGTGGAGGGCTTTTAAAGGGGCTAGAAAAGTATTGAAAGAGGAGGCTGTGAGAGTTCGAGCTATTAATTGCTTGGACTGGTGCGAGGTTGAGATTAACATCTCCAAGTTTTTCAAGAGCTACTCAGAGGGTCGTCGATATAGAAATGGGTGGCCTGAAATGTTAAAGCTGAAGGATTGGCCTACGTCAAATACTTTTGAACAATGTTTGCCAAGGCATGGTGCTGAATTTATCGCGATGCTTCCATTTAGTGACTACTCCCATCCAAAGTTTGGTATTCTGAATCTTGCTACAAAGCTTCCTGCTCTTTTGAAGCCAGATTTGGGACCCAAAACATACATTGCCAATGGATTTATGGAGGAGCTTGGTATAGGTGATTCTGTAACAAAACTACATTGTGACATTTCTGATGCGGTAAATGTACTAATGCACTCAACTGAAGTTAATATGCGTCCACGGAAAGCTTCTTGTAAAACTGGAAAAAAGTGTGGAAAAGGAACTGTAGAATATTCTCCTGTATGCTCTGAAATAGTGGAGAACGATACAAAAGGTTACTCACTAGAAAGGACAAATATTGGTGGTGAAGAAATGAATGCCCATCAAAATAAGTTCATGGACTTGGACTTTGATACAAATGGAACGGAGAAGGCAGTGAATTCTCAGCAATGTCCTAATTCTGCAGAAATAAACAGGCAATCGATTGAAAAATTGAACGCAAGGGTCGAGAATTTTGATTTCGATATGAATGACTTCAGCCTTGGTTCCTTAATGATGGGAGAAATATGTGAGAGGAGTTGTGATATGGTTAAGAAAGAGGATGATTCGCAAGAGCGGCCAAAAATCTTTTCACTTGAAAATTTAAATCTCATTGAAGCCAATCAGATCAGCAATGACCAAGAAAAAGAAATGTCTATGAGGACGACTAATGAGATATGTGGCAGGAACTATTCAACCCCTTCCTTGATTGATCCAAACGCATCTGTTCTTCCCTGTTACTTGCCAGATGATATGATAGATCATACCACTGGATTATGTCATGATGGCAGCACATCCACTCATAATCAGATTGTTGAAGATCCATGTCTAGACTTGAACTACTTTGCCAACAATGGTGATGATTTTCCTTCATCTAATGAGAAGATCTCAGTCCACACTTCTTTTTTTAATGGTAACAGCTCCAAAAGTGGGATAGCCTCAGACCCTAGCTGTCTTTCTGTTGAAAATGTTCACTCAGCTGTGGGACACGAAACTAATAAACAAGCTTCAAACAATGGAGATGTTTTTCAGACTCCATTGACCTCAGTTGAAAAACCCTATTCAAATTCAATCGGAGATTTATCTAAAATCAATGATTGTTCAATGATTGAACACTCAGGTGCCGTATGGGACATTTTTCGTAGGCAAGATGTTCCCAAGTTAATTGAGTTCCTTAATAAACACCAGGAAGAGTTCTGCCACATCAATAATCTTCCCGTGAATTCAGTAAATCATCCTGTACATGATCAGACTTTGTATCTGAGTGAAAAGCACAAGAAGAAGCTCAAGGAAGAGTATGGCATTGAGCCTTGGACATTTGAGCAACACCTTGGCGAGGCTGTTTTTATTCCTGCAGGATGTCCCCATCAAGTGAGAAATCGACAGTCATGCATTAAGGTTGCCCTTGATTTTGTTTCCCCTGAGAATGTTCAAGAGTGCATTCGATTGACAGAGGAGTTTCGGTTGCTCCCAAAAAACCACAGATCCAAAGAGGACAAACTAGAGGTGAAAAAGATGGCATTGTATGCCGTTGACAGTGCTGTGAAAGAAGCCAAAGATCTGATCTCGGAAATTCAGTAA 4746 41.32 MVPSNVEKEVGVLDLAEKKRNFGNLMIGGIGSVIEVDGQRETAKIPCSIENMETEDVNLGGEGIIGHYGGSCGISRENGGRNFVGDESTLQLWSGEDSCFYNGGEVGVGASGEAHFEKFEHGFGEVVKVGGSVSEADFGLCGGRIRAIFGETRDRNDSLSHDEERFQDVFGQVNGVKWDLNLGWCTDIGNQPAPILPGEHESANRGQRTLFDDYGGRSGTEVAISLGKKRGRPKGSKNRSKLVCAEEKKIGTELAKSSVREHGKRGRPKGSKNKKKTQTNGGVQGLFIQVNGGNDTETMALSCRTASFQGGDSIDCKSVTLSPNFKHGRGRPKGSKNKKKLLGCENSKVACEIEAASERGEKETFLTVRPTFAVENDVRLPCTGTGGNEGGNEMVMPKRKPGRPKGYKKSFIGGECGNKSLASKDGDYGSIHLPSLDNLPFGTYPSVPIGVNENETKTVQPSRKRGRGRPVGSNSKKKHPWMSEGNLVARNCIDILQLRLESDSESQTMAKVFGENVLSENKRGRPKGSKNKKTLVSGKNISMSPCIMRYQGMFDEVTCGNAGGNKFAEPEYKCIQATEDMIRKEEKITDKDHETLKQRDKKENVDESSTYKLRSRTISSKSFPGAKEEVASLKKKWRNLMCHQCRNDRSGVIECPKCKRKRYCYSCLQKWYPQLESEGLKKGCPFCRGFCNCSICLNKNFVVKALSEQPDKNVRLKKLLHVLYYTLPLLRHVQWEQKAELDIESSVLGIVLTEEDVIKAVLDDDDRIYCDNCSTSIVNFHRSCSNPECSYDLCLTCCRELREGFCKGGSKKEEALDQEFSQISHGQEWKAEVDGRIFCPPSMQGGCGSKEFILRRIFEANWIEKLISSAEDLTVNYKSPLPHFSQVCTLCHSKGSVEKNSSSENGVEICEARQAADRENSNDNYLYCPDAVLLKDNDIEHFQMHWSRGNPIIVRNVLENASGLSWEPMVMWRAFKGARKVLKEEAVRVRAINCLDWCEVEINISKFFKSYSEGRRYRNGWPEMLKLKDWPTSNTFEQCLPRHGAEFIAMLPFSDYSHPKFGILNLATKLPALLKPDLGPKTYIANGFMEELGIGDSVTKLHCDISDAVNVLMHSTEVNMRPRKASCKTGKKCGKGTVEYSPVCSEIVENDTKGYSLERTNIGGEEMNAHQNKFMDLDFDTNGTEKAVNSQQCPNSAEINRQSIEKLNARVENFDFDMNDFSLGSLMMGEICERSCDMVKKEDDSQERPKIFSLENLNLIEANQISNDQEKEMSMRTTNEICGRNYSTPSLIDPNASVLPCYLPDDMIDHTTGLCHDGSTSTHNQIVEDPCLDLNYFANNGDDFPSSNEKISVHTSFFNGNSSKSGIASDPSCLSVENVHSAVGHETNKQASNNGDVFQTPLTSVEKPYSNSIGDLSKINDCSMIEHSGAVWDIFRRQDVPKLIEFLNKHQEEFCHINNLPVNSVNHPVHDQTLYLSEKHKKKLKEEYGIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECIRLTEEFRLLPKNHRSKEDKLEVKKMALYAVDSAVKEAKDLISEIQ 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43483168 43491268 - Bma012816.2 Bma14g02007 95988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02007 1581 Pfam JmjC domain, hydroxylase 1428 1526 IPR003347 -
Bma14g02007 1581 Gene3D Cupin 1372 1552 - -
Bma14g02007 1581 Gene3D Cupin 924 1177 - -
Bma14g02007 1581 SUPERFAMILY Clavaminate synthase-like 938 1574 - -
Bma14g02007 1581 SMART AT_hook_2 398 410 IPR017956 GO:0003677
Bma14g02007 1581 SMART AT_hook_2 520 532 IPR017956 GO:0003677
Bma14g02007 1581 SMART AT_hook_2 326 338 IPR017956 GO:0003677
Bma14g02007 1581 SMART AT_hook_2 262 274 IPR017956 GO:0003677
Bma14g02007 1581 SMART AT_hook_2 464 476 IPR017956 GO:0003677
Bma14g02007 1581 SMART AT_hook_2 227 239 IPR017956 GO:0003677
Bma14g02007 1581 PANTHER ENBP1 PROTEIN 227 1580 - -
Bma14g02007 1581 MobiDBLite consensus disorder prediction 455 482 - -
Bma14g02007 1581 MobiDBLite consensus disorder prediction 383 406 - -
Bma14g02007 1581 ProSiteProfiles JmjC domain profile. 1059 1543 IPR003347 -
Bma14g02007 1581 ProSiteProfiles Zinc finger RING-type profile. 642 688 IPR001841 -
Bma14g02007 1581 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 227 1580 IPR045109 GO:0032454|GO:0033169
Bma14g02007 1581 MobiDBLite consensus disorder prediction 588 608 - -
Bma14g02007 1581 SMART cupin_9 1040 1543 IPR003347 -
Bma14g02007 1581 MobiDBLite consensus disorder prediction 253 282 - -
Bma14g02007 1581 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 639 700 IPR018866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02007 K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] - zju:107414789 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00632 Bma-Chr13:15164677 Bma14g02007 Bma-Chr14:43483168 2.44E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1040 . . . . . . . Bma14g02007 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0983 . . . . . . . . Blo09g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004873 1 3 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 8 2 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58434 PF02373 JmjC 1.20E-16 CL0029 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02007 Bma_Chr14 FPKM 1.137255 1.905061 10.117787 9.892052 2.495286 3.040212 2.866109 3.548195 3.756075 3.992965