Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02011 ATGGTGTACGCCACATTAGCTGTTGATAAAGAGTTGCAGCCTGATAAAGTGAGAAGGAAAATGACAGTCTCTGATGGAGTGCTTTCAGTCCAATTCGAGGCCACTGAGGCGAGATTTCTCCGAGCATCGTTTAGTTCTTTCTTAGATGTCCTCATGCTCACAACGAAAACAATTGAAGAATTTGGCCGAGGAATGAAATAG 201 43.28 MVYATLAVDKELQPDKVRRKMTVSDGVLSVQFEATEARFLRASFSSFLDVLMLTTKTIEEFGRGMK 66
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43514547 43518630 - Bma012820.1 Bma14g02011 95992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02011 66 Pfam Transcription factor Pcc1 2 59 IPR015419 -
Bma14g02011 66 Gene3D - 1 64 - -
Bma14g02011 66 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 1 62 IPR015419 -
Bma14g02011 66 PANTHER GEO08993P1 1 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02011 K15902 LAGE3, PCC1; EKC/KEOPS complex subunit LAGE3/PCC1 - nnu:104601538 106.686
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1030 . . . . Bpe03g00194 . . Bma14g02011 Cmo16g00047 . . . . . Sed13g0050 . Cpe14g00032 Bhi01g01503 Tan01g0083 Cmetu06g0196 . Hepe07g0052 Mch10g0050 . . . . . . . . . Cone5ag0697 . . . . . Cme06g01153 . . . . . . . . . . . . . Car16g00039 Car18g01238 . . . . . . . . . Cla05g00977 Cam05g1070 Cec05g1076 Cco05g1068 Clacu05g1062 Cmu05g1013 Cre05g1089 . Csa03g01976 Chy06g01189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009672 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02011 Bma_Chr14 FPKM 14.173841 12.335334 15.941761 14.254996 13.85617 16.666845 13.991382 14.002383 12.926287 13.013003