Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02018 ATGGAGCCTTCAGTTGGTGATTCTAAGTTCAGATGCAGCAAGTGCAGAAACCTTCTTGCCTACCGCCAAGACCTACTTTCCAAAGCTTTGCAGGTTAAATCTGGGCAAGCATATCTCTTCTCAAACGCAATGAACATTGTGGAAGGGCAAAAAATGGATATACAGTTGTTGACTGGCATTTACACAGTTGCAGGAATCTCGTGCAGCCAGTGTGGAGAACCGTTGGGCTGGAAGTACATAGAAGCTCAGGAAATGAAGGAGAAGTACAAGGAAGGAAAATTTGTACTTGAAAAAACCAAGCTTGCCAAAGAATACCGTTGA 321 43.61 MEPSVGDSKFRCSKCRNLLAYRQDLLSKALQVKSGQAYLFSNAMNIVEGQKMDIQLLTGIYTVAGISCSQCGEPLGWKYIEAQEMKEKYKEGKFVLEKTKLAKEYR 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43545695 43546268 - Bma012827.1 Bma14g02018 95999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02018 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 101 IPR004910 -
Bma14g02018 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
Bma14g02018 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 7 104 IPR039058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02018 - - - palz:118035936 127.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00395 Bma14g02018 CCT
Bma08g00395 Bma14g02018 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01019 Bma-Chr8:49313932 Bma14g02018 Bma-Chr14:43545695 5.63E-10 dispersed
Bma08g01020 Bma-Chr8:49326676 Bma14g02018 Bma-Chr14:43545695 1.58E-15 dispersed
Bma14g02018 Bma-Chr14:43545695 Bma08g00395 Bma-Chr8:9607497 3.18E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1005 . . . . . . . Bma14g02018 . . Cma02g01137 . Car02g00940 Car15g00947 . Cpe05g00587 . . . . . . . . . . . . . . . . Cone5ag0709 . . . Csa05g00033 Chy09g01451 . . . . Bda15g00792 . . Bma08g00395 . . Cmo02g01166 . . . . . . Cpe13g00323 Bhi12g00677 . . . Hepe06g0813 . . . . . . . . . Lsi09g00007 . . Cme09g02000
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015275 0 1 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 1 0 0 0 1 1 0 1 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02018 Bma_Chr14 FPKM 8.289221 8.315373 9.46091 8.649106 4.686614 4.896708 4.997328 9.210706 9.99426 11.567794