Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02025 ATGGAGAGAAACGAGTTTTCTGCTACGGAAACATTCGAATCGCAGCCATTTTCATCCACGAAAAAGAAGAGCAAAAACAAGGCGAGGTTCAGCGATGAACAGATTAGATCACTGGAGTCTATATTCGAAACAGAGACGAAGCTGGAGCCAAGGAAGAAGATGGAGGTGGCAGGAGAGCTGGGGCTGCAACCACGTCAGGTAGCTATATGGTTTCAGAACAAAAGAGCAAGATGGAAGTCCAAACAGATAGAGCAAGATTTGAGGATTCTCAGAGCTAACTATGATAGTTTATCGTCCAAGTTTGAAACTTTACAGGAAGAGAAGAAAGTTTTGCTCTCACAGCTGCAGAAACTAAGTGGCCTGCTAGACAAACCCCGCTGCAGTTCCACCACAAATGGAGATCAGGAAGAAGAAAAGGCGAGAAACAGGCTACAAGAAGAACTGGAGGAGCCAGAAACGGAGCATTCATACGAATACCAGAACCATGGCATAATCAGAAGTGTTGAGGACGACGGATGTGAGTTTGAAGTCAGTAACCCAGACGAAGAGAAGAGAAACTACATCAACTACGTTGAAGAAGATGGACGCCAGCTTTGGAACATTAGCGAACAGTTGCACGCATCGCTAACATCGCCTTCATTCGATAACTCATGCTGCAGTCCTGCGTGGCTAAATTTCTGGCCTTGA 687 45.56 MERNEFSATETFESQPFSSTKKKSKNKARFSDEQIRSLESIFETETKLEPRKKMEVAGELGLQPRQVAIWFQNKRARWKSKQIEQDLRILRANYDSLSSKFETLQEEKKVLLSQLQKLSGLLDKPRCSSTTNGDQEEEKARNRLQEELEEPETEHSYEYQNHGIIRSVEDDGCEFEVSNPDEEKRNYINYVEEDGRQLWNISEQLHASLTSPSFDNSCCSPAWLNFWP 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43590656 43591414 - Bma012833.1 Bma14g02025 96006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02025 228 PRINTS Lambda-repressor HTH signature 61 77 IPR000047 GO:0003677
Bma14g02025 228 PRINTS Lambda-repressor HTH signature 52 61 IPR000047 GO:0003677
Bma14g02025 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 9 227 - -
Bma14g02025 228 Gene3D - 18 88 - -
Bma14g02025 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 227 IPR045224 GO:0003700
Bma14g02025 228 MobiDBLite consensus disorder prediction 123 156 - -
Bma14g02025 228 Pfam Homeobox associated leucine zipper 81 122 IPR003106 GO:0006355|GO:0043565
Bma14g02025 228 MobiDBLite consensus disorder prediction 130 156 - -
Bma14g02025 228 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Bma14g02025 228 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
Bma14g02025 228 MobiDBLite consensus disorder prediction 1 31 - -
Bma14g02025 228 Pfam Homeodomain 25 79 IPR001356 GO:0003677
Bma14g02025 228 SMART HOX_1 23 85 IPR001356 GO:0003677
Bma14g02025 228 Coils Coil 80 121 - -
Bma14g02025 228 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Bma14g02025 228 CDD homeodomain 29 82 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02025 K09338 HD-ZIP; homeobox-leucine zipper protein - nnu:104593490 176.792
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01316 Bma14g02025 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g02025 Bma-Chr14:43590656 Bma15g01059 Bma-Chr15:42550266 4.50E-30 dispersed
Bma06g00567 Bma-Chr6:30528302 Bma14g02025 Bma-Chr14:43590656 2.41E-40 transposed
Bma10g01316 Bma-Chr10:46784129 Bma14g02025 Bma-Chr14:43590656 7.27E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58436 PF00046 Homeodomain 1.70E-16 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02025 Bma_Chr14 FPKM 16.540386 17.572563 14.806898 14.884016 30.824781 29.080444 32.551891 11.775657 11.006753 13.239342