Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02027 ATGAGCGGAAGACGCTCCTGGTTGACTGCGGTCAAGAAGGCTCTTACCCCTTCCACCAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAATGACAAAACCAACACCAGGAGAAGGGAAGACCATGACCCGGAAGAAGACGAAAAGAAGAGAGGGAAACGTAGATGGCTGTTCAGGAGAACTTCCATTCAAGAATCAAACGTACAACATTGCGAAGCAAGGATCATAACCTCAACCGCAAACATTGAGAGAGCCGCTACAAGTGACGAACGTGCTTCCGATGCGCAGCATAGACGTGCCATTGCAGTAGCCATGGCCACCGCAGCAGCAGCTCAGGCCGTGGTGGCAACGGCCCAAGCAGCCGTGGAGGTGTTTAGACTTTCCAGGTCTTCCCTTCTCGCAAGAGAGCACTCGGCTGCGCTTCTCATTCAAAAAGCCTTCAGAGGCTATCTGGCGAGAATAGCCCTCCAGGCGCTGAAAGGAATTGTGAAGTTGCAAGCTTTAGTGAGAGGATACAACGTTCGAAGGAGAGCCAAAATGACTCTCCAATGCATGGAAGCTCTGGTACGAGTTCAAGCCAGAGTCCTCCAGCAACGTACAAACAGGATCTCACGTGAAGATTCTGCATATTTTAGCGATCACAGCAGCCAGAGCCAGAAGGGATCCCGTTTCGCAGAAATCAGAAAGTCCTCCGCGACCTGTAAGATCATTTTTTGCCTGCATTTTTTTTTTCTCAATTTAACTGGGTTTTTAATAGTTCGTTTTATGCAGTCTAGAGAAGAAAGCAGCGCCCCTGAAGAGTCGCTCGAGCTGATGGATGTACAACTCATGGCCAGACAAAACTCTCTTTCTTACGCCTTCTCGCAGCAGATATGGAAGAGTGGTGGAAAGGGAAGAGAGAGGGAGGATAAATCACGATCGGCGTGGGAGAGCAAAGGCAGAAGATATTCATGCGATCAAAGAGACCCCATTAAAATAGTTGAAATGGATACTTCGTCTCACCCTTACTCTCCCTCCCCCCGCCATAACCAGAAATCACAGAAGCAACACCATCAATCTCCAGTAAACAGAGCCCACACTCTGTTGTCGCTTCAATCCAATACCCCATCGCCATTCAAAACCAAAAATCTGCAAATCCACTCGGCAAGCCCGCGCTGCATGAGAGAAGAAAGAAGCCATCCAAATCCAAACTACATGTCGACAACGGCATCAGCTGATGCTAGGTTTCGATCCATAAGTGCGCCGAGGCAGAGGGAGAAGAGCTGCTCTGCCCAAAAACGCCTGTCCTTCCCAGTTCCAGAGCCCATTGCTGCTGATAGATTTGAAATGAAGCCAACGTCGACGTCTTCTTGCTGCACAGACAGCCTTGTCGACGATGATGTCTCGCTGTCTCCACAGAGTGATCTCAGGGCGTGGTTTAGGCATTTGTAA 1428 49.58 MSGRRSWLTAVKKALTPSTKEKEKEKEKENDKTNTRRREDHDPEEDEKKRGKRRWLFRRTSIQESNVQHCEARIITSTANIERAATSDERASDAQHRRAIAVAMATAAAAQAVVATAQAAVEVFRLSRSSLLAREHSAALLIQKAFRGYLARIALQALKGIVKLQALVRGYNVRRRAKMTLQCMEALVRVQARVLQQRTNRISREDSAYFSDHSSQSQKGSRFAEIRKSSATCKIIFCLHFFFLNLTGFLIVRFMQSREESSAPEESLELMDVQLMARQNSLSYAFSQQIWKSGGKGREREDKSRSAWESKGRRYSCDQRDPIKIVEMDTSSHPYSPSPRHNQKSQKQHHQSPVNRAHTLLSLQSNTPSPFKTKNLQIHSASPRCMREERSHPNPNYMSTTASADARFRSISAPRQREKSCSAQKRLSFPVPEPIAADRFEMKPTSTSSCCTDSLVDDDVSLSPQSDLRAWFRHL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43594429 43596079 - Bma012835.1 Bma14g02027 96008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02027 475 ProSiteProfiles IQ motif profile. 159 186 IPR000048 GO:0005515
Bma14g02027 475 Gene3D - 133 187 - -
Bma14g02027 475 Pfam Protein of unknown function (DUF4005) 339 435 IPR025064 -
Bma14g02027 475 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Bma14g02027 475 MobiDBLite consensus disorder prediction 294 327 - -
Bma14g02027 475 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 4 437 - -
Bma14g02027 475 MobiDBLite consensus disorder prediction 1 51 - -
Bma14g02027 475 SMART iq_5 134 156 IPR000048 GO:0005515
Bma14g02027 475 SMART iq_5 157 178 IPR000048 GO:0005515
Bma14g02027 475 Pfam IQ calmodulin-binding motif 136 152 IPR000048 GO:0005515
Bma14g02027 475 Pfam IQ calmodulin-binding motif 159 178 IPR000048 GO:0005515
Bma14g02027 475 MobiDBLite consensus disorder prediction 379 400 - -
Bma14g02027 475 PANTHER IQ-DOMAIN 5-RELATED 4 437 - -
Bma14g02027 475 MobiDBLite consensus disorder prediction 16 51 - -
Bma14g02027 475 MobiDBLite consensus disorder prediction 293 354 - -
Bma14g02027 475 MobiDBLite consensus disorder prediction 331 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02027 - - - tcc:18605847 321.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g02027 Bma-Chr14:43594429 Bma02g01259 Bma-Chr2:54615161 2.02E-54 dispersed
Bma14g02027 Bma-Chr14:43594429 Bma14g00379 Bma-Chr14:4537470 2.01E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g977 . . . Bda07g01956 Bpe03g00205 . . Bma14g02027 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0723 . . . . . . . Blo09g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02027 Bma_Chr14 FPKM 52.42387 51.323639 48.47216 50.64175 76.523506 49.802231 70.693932 44.427677 56.210415 65.314941