Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02028 ATGGCTGTTGCTGAGAATGCTGGACCCAGAATCGGGTCGTCGAGTCAGAATTTGGACAATTCCACAGTGACAACTAATTCAACAACTCTTCTTGAAAACCAAAAACCCAGAAATGATCCTGGGGTTTTGAGTTTGGAATCCAATTTTCATCACAGCAGTAGCGATCAGAGCCATCTCCAACAGACAGGCATCACAAATACAGGATCAGTTGGCCCCAACAATTTCAAGGTTCAAATGGGTCAAATGCAAAATGGGTACGAAGCGAATGGGGTCAATAGCCCGCAGATGGTGGCAAGGTCTAATGGGATTATGAACGACGAGGATGGGGATAACAATTTTAAGAGGGATATGAGGGATTTGGAAGAGCTATTGTCCAAGTTGAATCCCATGGCTGAGGAATTTGTACCTCCCTCCCTAGCCAAAAATCACCTTGGCTACTTAAGTAGCGGTGGGTTTGGATTTTCAAACAACTTTCTGCTGCAAACTAATTCTGGCAATGTTAATGGAAATACTAATCGGAGGAAGAAGAATGGCTTTAGTCAAGGGAGGCGTAGGATGAATTATAAAATGACTGCAGCACAGCGAGATGAAATGACTAGGAGGACTGTGTATGTATCTGACATTGATCAACAGGTCACTGAAGAGCAACTTGCTGCACTCTTTCTTAGCTGTGGACAAGTTGTTGATTGTCGTATTTGTGGTGATCCTAACTCCATTCTCCATTTTGCCTTTATTGAGTTTACTGATGATGGTAGTTCACAACCCTATATACTTCAAATTATGTCTATATCGTCTATGTTCTGTCGAATTGACTATAGCCTTCTTGTAGAGAGTGCAAGGGCTGCTTTGAATTTGTCGGGAACTATGCTTGGTTATTACCCTGTTAGAGTGCTACCTTCAAAAACTGCAATTGCGCCTGTTAATCCTGAATTTTTGCCTAGGTCTGCAGATGAACGTGAAATGTGTTCAAGAACTATTTATTGTACAAATATTGACAAGAAGGTCGTTACTCAAGCAGAAGTCAAACTTTTCTTCGAGTCATTGTGTGGGGAGGTTCAACGTCTTAGGCTGCTGGGAGACTACCATCACTCCACTCGTATAGCGTTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGTGGCGTGGTTTTGGGTTCACTGCCAATAAGGGTGAGCCCTTCAAAGACTCCAGTCCGCCCTCGGTCTCCCCGGCCTCTAATGCTATGA 1242 43.4 MAVAENAGPRIGSSSQNLDNSTVTTNSTTLLENQKPRNDPGVLSLESNFHHSSSDQSHLQQTGITNTGSVGPNNFKVQMGQMQNGYEANGVNSPQMVARSNGIMNDEDGDNNFKRDMRDLEELLSKLNPMAEEFVPPSLAKNHLGYLSSGGFGFSNNFLLQTNSGNVNGNTNRRKKNGFSQGRRRMNYKMTAAQRDEMTRRTVYVSDIDQQVTEEQLAALFLSCGQVVDCRICGDPNSILHFAFIEFTDDGSSQPYILQIMSISSMFCRIDYSLLVESARAALNLSGTMLGYYPVRVLPSKTAIAPVNPEFLPRSADEREMCSRTIYCTNIDKKVVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRPLML 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43597061 43600099 - Bma012836.1 Bma14g02028 96009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02028 413 Gene3D - 309 407 IPR012677 -
Bma14g02028 413 Gene3D - 161 304 IPR012677 -
Bma14g02028 413 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 251 - -
Bma14g02028 413 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 277 412 - -
Bma14g02028 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 394 IPR000504 GO:0003723
Bma14g02028 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 250 IPR000504 GO:0003723
Bma14g02028 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 302 IPR000504 GO:0003723
Bma14g02028 413 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 251 - -
Bma14g02028 413 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 277 412 - -
Bma14g02028 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Bma14g02028 413 CDD RRM2_CID8_like 320 402 IPR034825 -
Bma14g02028 413 CDD RRM1_CID8_like 200 304 IPR034823 -
Bma14g02028 413 Pfam Ataxin-2 C-terminal region 124 138 IPR009818 -
Bma14g02028 413 SUPERFAMILY RNA-binding domain, RBD 314 407 IPR035979 GO:0003676
Bma14g02028 413 MobiDBLite consensus disorder prediction 9 35 - -
Bma14g02028 413 MobiDBLite consensus disorder prediction 45 76 - -
Bma14g02028 413 MobiDBLite consensus disorder prediction 1 76 - -
Bma14g02028 413 SUPERFAMILY RNA-binding domain, RBD 172 251 IPR035979 GO:0003676
Bma14g02028 413 SMART rrm1_1 202 271 IPR000504 GO:0003723
Bma14g02028 413 SMART rrm1_1 325 397 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02028 - - - mcha:111011617 529.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01318 Bma14g02028 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00905 Bma-Chr13:39338556 Bma14g02028 Bma-Chr14:43597061 2.58E-124 dispersed
Bma10g01318 Bma-Chr10:46822952 Bma14g02028 Bma-Chr14:43597061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02028 Bma_Chr14 FPKM 0.183109 0.0 0.719018 1.126735 6.080533 6.814275 6.231054 0.515051 0.426503 0.521967