Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02029 ATGGCTGCAATTGCCTCTTCCATTCAACCCACGTTTTGCTCTCGTCTTCCCCTTTCTTCTTCCTCTTCCACTTCATCTTCTCTTCTCAGCTCTGCAACTGCAACAGCGACACCATTCCTATCTGGATTTAAAGCCCAAGCCTTTTCCTCCCAAGCTTCTACTTTCTTCAACTCCAGCGAGTGTTTCAGACTCGTCAAAATTGTACCCAAGAGGGACCATGCTCATAACTCTTTTAATGTTCGTATGACCTGGGATGGTCCGCTCTCGTCGGTCAAATTAATTATTCAAGTAAAAAACTTTGAGCTGACAGAAACGGTGAAGAAGCATGTGGAAGACAAGGTTGGAAAGGCTGTGCAGAAGCACAGCCACATAGTGAGGGAAGTGGATGTTAGATTATCAGTTAGAGGTGGAGAGTTTGGGAAAGGCCCAAGGATTAGAAGATGCGAGGTCACTCTATTCACGAAGAAGCATGGAGTGGTGCGAGCGGAGGAGGATGCTGATACCGTCTACGCCAGTATAGATTTGGTGTCTTCCATCATACAAAGAAAGTTGAGGAAAATCAAGGAGAAGGTTTCTGACCACGGCCGACACATGAAGGGATTTGACAGATTGAAAGTTAGAGAGCCTACAATACCAGAGATACAAGACGAGGATGACGCAGTTTCTGTGGAAGGGGACGGTGAAATAATGGACGAGATTGTACGTACAAAGTACTTCGACATGCCACCTTTGACTGTGAGTGAAGCAAAAGAACAGCTGGAAAATATCGATCATGACTTCTATGGTTTCCGGAATGAAGAAACTGGCGAAATCAATATCCTATACAAAAGAAAAGAAGGAGGATACGGGCTTATCATACCGAAAGGAAATGGCATGGCTGAGAAATTAGAGTCTGTCGTTTTAGAAGCAGCTAAAGAACCTTCCATGGCAGAGTAA 936 44.66 MAAIASSIQPTFCSRLPLSSSSSTSSSLLSSATATATPFLSGFKAQAFSSQASTFFNSSECFRLVKIVPKRDHAHNSFNVRMTWDGPLSSVKLIIQVKNFELTETVKKHVEDKVGKAVQKHSHIVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDADTVYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFDRLKVREPTIPEIQDEDDAVSVEGDGEIMDEIVRTKYFDMPPLTVSEAKEQLENIDHDFYGFRNEETGEINILYKRKEGGYGLIIPKGNGMAEKLESVVLEAAKEPSMAE 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43601440 43603297 - Bma012837.1 Bma14g02029 96010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02029 311 Hamap Ribosome hibernation promoting factor [hpf]. 91 288 IPR034694 -
Bma14g02029 311 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 231 284 IPR032528 -
Bma14g02029 311 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 94 191 IPR003489 GO:0044238
Bma14g02029 311 Gene3D - 92 195 IPR036567 -
Bma14g02029 311 Gene3D - 243 291 IPR038416 -
Bma14g02029 311 CDD RaiA 92 190 IPR003489 GO:0044238
Bma14g02029 311 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 92 197 IPR036567 -
Bma14g02029 311 PANTHER 30S RIBOSOMAL PROTEIN 77 291 - -
Bma14g02029 311 PANTHER 30S RIBOSOMAL PROTEIN 77 291 - -
Bma14g02029 311 TIGRFAM yfiA: ribosomal subunit interface protein 92 195 IPR003489 GO:0044238
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02029 - - - cmax:111482691 422.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g964 . . . Bda07g01958 . . . Bma14g02029 Cmo16g00020 . . . . . . . Cpe14g00016 . . . . . . . . . . . . . . Cone1ag1020 Cone5ag0727 . . . . . . . Blo09g00002 . . . . . . . . . . . Car16g00017 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012302 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02029 Bma_Chr14 FPKM 37.425713 38.783897 48.221283 43.873989 28.406738 23.342272 31.402077 18.93918 21.459642 21.859478