Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02030 GTCCGAGGTGAGTTGGATGAATGGGGGGAGGTTGTAGTGAGCAGCCCAAGTATGGAAACGGAGACGGGGATGAAAGATGGGAGTTCGAGGAGGGTCGTGGTCAGGTGGGAGAGGTTTTTGCAGCGGATGATGCTCAGGGTCTTGCTCGTCGAAGCTGCTGATGATTCCACTCGCCAACTTATCGTTGTCCTTCTAAGCAAATGTGGCTACAAAGCAGTTGCGGCCACCCCTGATGGCTTAAAGGCTTGGGATTCTATTAGCACTGTCTATAAATGCATGATGAGAGGTGCTGCTGACTATCTCGTTAAACCTATTCGGAGAAATGAGTTGAAAAATCTCTGGCAACACGTTTGGAGAAGACAATCTTCAACTGCTGGAAGAAATGGCTCCCAAGAGCGTGTTGCACGACAAAAATTTGAAGTTACGTCTGAAAACGAGGCGGCAAGCAATCATTCAAATGGCTATTTTAAAGAAAGATTGAATTTTTCTCCCTTGCAGAGCTCTTGTACAAAGCCAGAAGTTGAAGATGAGAGTACCCGTGTGGGAAAGATGCAGGAGTATCCACAGGCATACGTTGGCAGATCATTTATTGGTCACTTTAACTTACAAAGGGATGACACTAATGTCAACTTGTGCCAGAAATTGCTTATGCATGAAAATGAAACTGGAGGGTCCAATTTGGGCACAAAAGGGAAAACCAACGCGGAAATTGCCGAAACTACAAGCGATGAGGCTAGAAGTCATAACATTGATCCTGATAACGCTGGTGATGCTAACACCAACAATTTCACCCTTGTTAGTTCTTCCAGAAACACCACTGACTTGATTGGAGCATTTGCAGACTATCCAGATTGCAATGACAGGAATTCCTCTTCAAGTAATGGTACTAGCAATTTTGATAATGCTTCGCAGTTAGATCTTTCCTTGAGAAGATGTCATCCCAATGATTTTGAGGACAATCTTATGACAGAAAGGCATACCCTCAGGCACTCTAATGCCTCGGCCTTTTTTTTGGGTTTTTTCCTCCTAATTGGAAGGGCCCAATTTGATGTGGCCTTGATTTTAGGCCCATGTTTTGAATGA 1083 44.41 VRGELDEWGEVVVSSPSMETETGMKDGSSRRVVVRWERFLQRMMLRVLLVEAADDSTRQLIVVLLSKCGYKAVAATPDGLKAWDSISTVYKCMMRGAADYLVKPIRRNELKNLWQHVWRRQSSTAGRNGSQERVARQKFEVTSENEAASNHSNGYFKERLNFSPLQSSCTKPEVEDESTRVGKMQEYPQAYVGRSFIGHFNLQRDDTNVNLCQKLLMHENETGGSNLGTKGKTNAEIAETTSDEARSHNIDPDNAGDANTNNFTLVSSSRNTTDLIGAFADYPDCNDRNSSSSNGTSNFDNASQLDLSLRRCHPNDFEDNLMTERHTLRHSNASAFFLGFFLLIGRAQFDVALILGPCFE 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43603874 43606213 + Bma012838.1 Bma14g02030 96011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02030 360 SUPERFAMILY CheY-like 44 130 IPR011006 -
Bma14g02030 360 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 84 336 - -
Bma14g02030 360 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 84 IPR045279 GO:0009736
Bma14g02030 360 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 35 84 - -
Bma14g02030 360 MobiDBLite consensus disorder prediction 124 147 - -
Bma14g02030 360 Gene3D - 80 169 - -
Bma14g02030 360 PANTHER TWO-COMPONENT RESPONSE REGULATOR 84 336 IPR045279 GO:0009736
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02030 K12130 PRR5; pseudo-response regulator 5 - zju:107414998 284.648
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01321 Bma14g02030 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g02030 Bma-Chr14:43603874 Bma12g00984 Bma-Chr12:41886543 7.51E-12 dispersed
Bma10g01320 Bma-Chr10:46835309 Bma14g02030 Bma-Chr14:43603874 3.91E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g957 . . . . . . . Bma14g02030 Cmo16g00018 . . . . . . . . . . . . . . . . . . . . . . Cone1ag1024 Cone5ag0731 . . . . . . . Blo09g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02030 Bma_Chr14 FPKM 1.320856 0.793189 3.311733 3.307267 4.570251 5.941704 7.366436 1.943352 2.557582 1.59774