Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02042 ATGAAGATAGTCTCTGGCCTATCAGGTAACGATCAAAAAACTCTTGAACAGACGTCTGGTTTTCTTCTCCGTTCGGCAACCGACTGGTTATTTATTGTCGCAGGGGTTGAGTCAATCCAAATAGAACTGAAAGACAAGAAGATGACAGTGGTCGGAGACATCGATCCGGTGTCTGTGGTGAACAAATTGAGGAAGTTTTTCCAGGCAGAAATAGTTTCAGTAGGGCCGGCGAAAGAGGAGAAGAAGAAGGAAGAACCAGCAAAGAAAGAAGACCCCAAAAAAACAGACGACAAGAAGGCTGCTGCGAAAGATCCAGTGGCTGAGCTTGTCAAGGCTTATCAAGCCCATAATCCTTACCTGACTACCCATTATTATGTCAGAAGTGCAGAGGAAGACCCTAATGCTTGTGTTATCTGTTGA 420 44.76 MKIVSGLSGNDQKTLEQTSGFLLRSATDWLFIVAGVESIQIELKDKKMTVVGDIDPVSVVNKLRKFFQAEIVSVGPAKEEKKKEEPAKKEDPKKTDDKKAAAKDPVAELVKAYQAHNPYLTTHYYVRSAEEDPNACVIC 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 43820434 43820853 - Bma012852.2 Bma14g02042 96023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02042 139 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 33 139 - -
Bma14g02042 139 MobiDBLite consensus disorder prediction 75 103 - -
Bma14g02042 139 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 33 139 - -
Bma14g02042 139 Gene3D - 1 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02042 - - - pvy:116127976 120.553
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01254 Bma14g02042 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01185 Bma-Chr6:48926365 Bma14g02042 Bma-Chr14:43820434 1.73E-25 dispersed
Bma10g01255 Bma-Chr10:44559064 Bma14g02042 Bma-Chr14:43820434 8.67E-39 dispersed
Bma10g01256 Bma-Chr10:44595799 Bma14g02042 Bma-Chr14:43820434 2.42E-29 dispersed
Bma14g02042 Bma-Chr14:43820434 Bma05g01187 Bma-Chr5:50974023 2.16E-28 dispersed
Bma10g01248 Bma-Chr10:44199419 Bma14g02042 Bma-Chr14:43820434 2.30E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g770 . . Bda05g00094 . Bpe03g00155 . Bma10g01254 Bma14g02042 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0061 . Csa05g00243 . . Blo07g00373 Blo09g00061 . . . . . . . . . . . . . . . Bhi12g00777 . . . . . Lcy12g0059 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021461 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02042 Bma_Chr14 FPKM 20.028166 21.780897 23.304098 24.451691 18.542492 18.363777 18.390907 67.441223 63.648491 66.088509