Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g02088 ATGGTGACTTCGTCGATAGTGAATACGTACCCACTGTCGAGCTACACCTTCGGAACGAAAGAGCCAAAGATGGAGAAGGACACATCTGTGGCTGATCGGCTTGCTCGGATGAAAGTCAATTATATGAAAGAGGGCATGAGGGTGAGCGTTGAAGCCATCTTGTTGGTGAGTTGTTTTTGTTCTAATCAGCAATTGAAAATGGATTTATACAAATGA 216 43.52 MVTSSIVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRVSVEAILLVSCFCSNQQLKMDLYK 71
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 44259084 44259464 - Bma012899.1 Bma14g02088 96069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g02088 71 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE 1 57 - -
Bma14g02088 71 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 1 57 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bma14g02088 71 Pfam Nucleotide hydrolase 7 57 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bma14g02088 71 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g02088 K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 - twl:119986028 108.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g02088 Bma-Chr14:44259084 Bma14g02089 Bma-Chr14:44302555 7.41E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021193 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g02088 Bma_Chr14 FPKM 30.417873 38.780151 66.125412 64.850716 15.539527 11.70879 14.375524 14.87488 14.341302 13.190487