Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00014 ATGTCTTCCCTCACTATTCCTCCCAATCTAACCTCCCCACGAGACGATGCCGCTCTACTCTACCGCGCCTTTAAAGGTTTTGGCTGCGACACTGCAGCAGTCATCAATGTTCTGGCCCACAGGGATGCAGCACAGCGTGGTTTGATTCAGCAAGAATACAGAGCCATGTACTCAGAAGAGCTTACAAAGCGTTTATCTTCTGAACTTAGTGGTGATGTCAAGAAGGCCGTTTTGCTCTGGATGTATGATCCAGCTACCCGTGACGCGACTGCTTTAAGGCAGGCTTTAACTGGAGATGTTATTGATCTCAAAGCTGCCACAGAAATTATATGCTCTCGTTCTCCATCCCAGATACAACACTTCAAGCAAATTTATTTGTCTATGTTTAGATCTTATGTTGAACATGATCTTCAAGTTGCAGCTGGAGATCACAAAAAGTTGTTGCTGGCCTATGTAAGTAAACCAAGATATGAAGGCCCAGAAGTTGATAGGGCTTTGGTAGATAAGGATGCTAAAGCTCTCTACAAAGCAGGGGAGAAAAGAATGGGAACAGATGAAAACACCTTCATATGCATATTCAGTGAGAGAAGCCGGGCACATCTTGCTGCCGTTAGTGCTGCTTACAGTTACATGTATAAGACCCCTTTGAAAAAAGCTATTAAAAAGGAAACATCGGGGAACTTTGAATTTGGTCTTTTGACTATTCTACAATGTTCTGAAAATCCTGGCGTGTATTTTGCGAAGGTTTTGCACAAAGCAATGAAAGGAATGGGCACGGATGACAGTAGGCTTATCATGACGATTGTGACAAGGACGGAGATTGATATGCTGTATATAAAGGCGGAGTACCAGAAGAAATACAGAAAGACACTGCACCATGCCGTTCAGTCTGAAACGTCAGGACACTACAAGAACTTCCTTCTTGCTTTAATAGGCCCCTAA 942 43.52 MSSLTIPPNLTSPRDDAALLYRAFKGFGCDTAAVINVLAHRDAAQRGLIQQEYRAMYSEELTKRLSSELSGDVKKAVLLWMYDPATRDATALRQALTGDVIDLKAATEIICSRSPSQIQHFKQIYLSMFRSYVEHDLQVAAGDHKKLLLAYVSKPRYEGPEVDRALVDKDAKALYKAGEKRMGTDENTFICIFSERSRAHLAAVSAAYSYMYKTPLKKAIKKETSGNFEFGLLTILQCSENPGVYFAKVLHKAMKGMGTDDSRLIMTIVTRTEIDMLYIKAEYQKKYRKTLHHAVQSETSGHYKNFLLALIGP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 184693 187075 - Bma012983.1 Bma15g00014 96136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00014 313 PANTHER ANNEXIN 7 313 - -
Bma15g00014 313 SUPERFAMILY Annexin 2 312 IPR037104 GO:0005509|GO:0005544
Bma15g00014 313 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Bma15g00014 313 ProSiteProfiles Annexin repeat profile. 165 237 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 SMART annex3 258 310 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 SMART annex3 102 151 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 SMART annex3 183 235 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 ProSiteProfiles Annexin repeat profile. 241 312 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 PANTHER ANNEXIN 7 313 - -
Bma15g00014 313 ProSitePatterns Annexin repeat signature. 258 310 IPR018252 GO:0005509|GO:0005544
Bma15g00014 313 Gene3D Annexin 156 241 IPR037104 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 254 274 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 174 200 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 298 311 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Bma15g00014 313 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Bma15g00014 313 Gene3D Annexin 242 312 IPR037104 GO:0005509|GO:0005544
Bma15g00014 313 Pfam Annexin 245 310 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 Pfam Annexin 87 150 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 Pfam Annexin 170 235 IPR018502 GO:0005509|GO:0005544
Bma15g00014 313 Pfam Annexin 16 79 IPR018502 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00014 K17098 ANNAT; annexin D - csv:101209769 486.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00427 Bma-Chr3:3250241 Bma15g00014 Bma-Chr15:184693 2.16E-28 dispersed
Bma04g01675 Bma-Chr4:52565963 Bma15g00014 Bma-Chr15:184693 7.80E-35 dispersed
Bma09g00031 Bma-Chr9:621981 Bma15g00014 Bma-Chr15:184693 9.53E-15 dispersed
Bma15g00014 Bma-Chr15:184693 Bma15g01041 Bma-Chr15:41929412 1.77E-07 dispersed
Bma15g00014 Bma-Chr15:184693 Bma08g00868 Bma-Chr8:46823562 7.26E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003010 1 2 1 1 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00014 Bma_Chr15 FPKM 11.353841 12.241964 12.207685 12.432336 10.82439 9.308056 10.689162 13.918136 12.95583 14.563398