Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00018 ATGCCGAGCAAGGATTTAAGGAGGTTTCCAATGGGGTCTAAACAGAGTCATTGGGTGGAACACACAAAGGAAGTACAAGTTTCTAATTTACAAGTTAAATCTGAGGGAGAGTTCGACAAATTTGGTGATAAAAGCTCAGCGTTAATGGAAGAGAAAAATGATACTGTTGTAAAAGATCAAACGGATGACAAGCTGAACAGTAAAGAAGTTGCTGTAGGATCAGCTGACAACACAGAGACTTTTGTTGAAGGGGCAGGCGATGGACACAATTCAAGTCTTGAAGAAAACAATTTAGAGTCCTTCCAAGATAAACCTGAGAAGCAGAGTGCTGCCATTGCTCCAAAAACTTTTGTCGCCCCTGAGATATTCGATGGAAAAACAATTAACGTGGTGGATGGACTCAAACTGTATGAAGAGTTGTTTGATGATGCTGAGGTTTCAAAACTTGTTTCGGCGGTAAATGATCTGAGGAGTGCGGGGAAAAAAGGACAATTGCCAGGTCAAACGTATGTGGTGTCAAAGAAGCCGTCAAAAGGACACGGCAGAGAGATGATTCAACTAGGTCTTACCATTGCAGATGTCCCCGCTGATGATGAAAAAGCTGCCGGAATGTCCAAAGATGGGAAAATCGAAGCCATTCCTTCCTCAATCCAAGATGTGATTGAACGCTTGGTTAACATGCAAGTAACAAATGTGAAGCCAGACTGTTGCATCATTGATTTCTATAACGAGGGTGATCACTCACAACCTCATGTGTTGCCTCCGGGGTATGGAAGGCCTGTTTGCATCCTATTTTTGACAGAATGTCAAATGTCTTTCGGCAGAGTAATTGGAATAGACCGTCCTGGAGATTTTAGAGGTTCTCTGAAACTTTCTCTTTCTTCTGGATCTCTGCTCGTGATGGAAGGAAACTCAACAGATTTTGCGAAACATGCCATCTATTCCAGTCGGAAGCAGCGGATACTTGTTACTCTAACCAAGTCACTGCCAAAGAAAGGTGATAACCCCCGCATATCTTCTTCAACCACCAGCACTCCAAACTGGAGCCCATCTCCAAGCTGGTCTCCCAACCACATTCGCCATTCCATTGGACACAAGCGGTATCCAGCCATTCCAACCCCAGCCATTTTAGCACCGGCCCCACCCATTCACCCTCACATTGCGACTCCAAATGGCTTGACTCCTTTGTTTGTCCTCCCGCCTTCGGCGATGCCTTATCCTTCAGCGGTTCCTATTCCCTCTACCTCATCAGCATGGCCAGGTCCACCCCCTCCGAGGCATCCTTCTCCATCTGTCCCTCTTTTCTGGGACTGGAGTTTTTCTTCCACCCCCAGGTTCTGGAAATTCTTCATCACCACAACCGATATTGAGTTCTGCAAATGA 1383 45.63 MPSKDLRRFPMGSKQSHWVEHTKEVQVSNLQVKSEGEFDKFGDKSSALMEEKNDTVVKDQTDDKLNSKEVAVGSADNTETFVEGAGDGHNSSLEENNLESFQDKPEKQSAAIAPKTFVAPEIFDGKTINVVDGLKLYEELFDDAEVSKLVSAVNDLRSAGKKGQLPGQTYVVSKKPSKGHGREMIQLGLTIADVPADDEKAAGMSKDGKIEAIPSSIQDVIERLVNMQVTNVKPDCCIIDFYNEGDHSQPHVLPPGYGRPVCILFLTECQMSFGRVIGIDRPGDFRGSLKLSLSSGSLLVMEGNSTDFAKHAIYSSRKQRILVTLTKSLPKKGDNPRISSSTTSTPNWSPSPSWSPNHIRHSIGHKRYPAIPTPAILAPAPPIHPHIATPNGLTPLFVLPPSAMPYPSAVPIPSTSSAWPGPPPPRHPSPSVPLFWDWSFSSTPRFWKFFITTTDIEFCK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 243080 247794 - Bma012987.1 Bma15g00018 96140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00018 460 MobiDBLite consensus disorder prediction 56 104 - -
Bma15g00018 460 SUPERFAMILY Clavaminate synthase-like 121 325 - -
Bma15g00018 460 MobiDBLite consensus disorder prediction 333 355 - -
Bma15g00018 460 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 19 430 - -
Bma15g00018 460 Gene3D - 119 335 IPR037151 -
Bma15g00018 460 MobiDBLite consensus disorder prediction 331 355 - -
Bma15g00018 460 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 19 430 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00018 - - - gmx:100794176 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00701 Bma-Chr9:45093139 Bma15g00018 Bma-Chr15:243080 1.51E-29 dispersed
Bma10g01030 Bma-Chr10:26821642 Bma15g00018 Bma-Chr15:243080 6.68E-35 dispersed
Bma13g00033 Bma-Chr13:414289 Bma15g00018 Bma-Chr15:243080 5.46E-35 dispersed
Bma15g00018 Bma-Chr15:243080 Bma15g00563 Bma-Chr15:6520857 9.46E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00018 Bma_Chr15 FPKM 15.331081 16.966228 21.164312 22.939133 19.836893 18.080677 19.94132 30.388582 27.510511 28.932161