Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00019 ATGTTTTTTTCTCTTTTCAATTTCTGTGCAGAGCTTCGTATTCATGTCAAAAATCCGGATAGACTTGTGGTGAATGCGTCGATCTCAGTTTCTGAACCTAATTTGAGGTCTCCTGTTTTGAACAACAAGTCACAGAATCCAATTGTAGTCATTGACAACTACGACAGCTTCACCTACAACCTTTGTCAGTACATTGGAGAGTTGGGATATCATTTTGAGGTTTATCGAAACGATGAATTAACGGTGGAGGATCTGAAGAGGAAAAATCCCAGGGGAGTGCTGATCTCGCCAGGGCCTGGCACACCTCAGGACTCTGGGATATCACTGCAAACAGTGCTGGAACTTGGCCCTATTGTCCCTCTATTTGGTGTATGCATGGGGAAAATTATTCGTTCCCCTTTTGGTGTTATGCATGGAAAAAAGTCTCTCGTGTATTATGATGAGAAAGGAGAGGATGGGCTCTTGGCTGGCTTACAAAACCCTTTCGTTGCTGGCCGATATCATAGCCTAGTAATCGACAAGGAGAGTTTTCCTTCTGATGAACTAGAAATCACAGCATGGACAGAAGATGGACTGATAATGGCTGCTCGGCACAAGAGATATAAGCATATACAAGGAGTTCAGTTCCACCCAGAAAGTATTATAACAAGTGAAGGCATGACAATTGTGCACAACTTTGTGAGGATGTTAGAGAGGAATGAAGCTGAATAA 711 42.76 MFFSLFNFCAELRIHVKNPDRLVVNASISVSEPNLRSPVLNNKSQNPIVVIDNYDSFTYNLCQYIGELGYHFEVYRNDELTVEDLKRKNPRGVLISPGPGTPQDSGISLQTVLELGPIVPLFGVCMGKIIRSPFGVMHGKKSLVYYDEKGEDGLLAGLQNPFVAGRYHSLVIDKESFPSDELEITAWTEDGLIMAARHKRYKHIQGVQFHPESIITSEGMTIVHNFVRMLERNEAE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 251255 253658 + Bma012988.1 Bma15g00019 96141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00019 236 Pfam Glutamine amidotransferase class-I 49 227 IPR017926 -
Bma15g00019 236 PRINTS Anthranilate synthase component II signature 206 219 - -
Bma15g00019 236 PRINTS Anthranilate synthase component II signature 159 171 - -
Bma15g00019 236 PRINTS Anthranilate synthase component II signature 48 62 - -
Bma15g00019 236 PRINTS Anthranilate synthase component II signature 120 131 - -
Bma15g00019 236 PRINTS Anthranilate synthase component II signature 93 102 - -
Bma15g00019 236 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 47 236 - -
Bma15g00019 236 PANTHER MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED 22 235 - -
Bma15g00019 236 Gene3D - 46 229 IPR029062 -
Bma15g00019 236 TIGRFAM trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 48 228 IPR006221 -
Bma15g00019 236 CDD GATase1_Anthranilate_Synthase 48 227 IPR006221 -
Bma15g00019 236 PRINTS Glutamine amidotransferase superfamily signature 206 219 - -
Bma15g00019 236 PRINTS Glutamine amidotransferase superfamily signature 93 102 - -
Bma15g00019 236 PRINTS Glutamine amidotransferase superfamily signature 120 131 - -
Bma15g00019 236 PANTHER ANTHRANILATE SYNTHASE BETA SUBUNIT 1, CHLOROPLASTIC 22 235 - -
Bma15g00019 236 SUPERFAMILY Class I glutamine amidotransferase-like 48 231 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00019 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] - csv:101210521 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00502 Bma-Chr6:24684715 Bma15g00019 Bma-Chr15:251255 5.52E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g542 . . . . . Bpe10g01010 . Bma15g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003870 1 2 1 1 1 2 1 4 3 0 2 2 1 1 1 1 2 1 1 4 1 3 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00019 Bma_Chr15 FPKM 4.929787 4.94793 2.72197 2.269858 1.404191 1.277179 1.316854 4.10453 4.29145 5.01643