Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00021 ATGGTTGCTCATGGGTTTCAATTAAAACCCTTCGAAATCGCTAATTCAAGCTCCCAGGAGCTTACTCTTACCTACCTCTGTGATAATTCCAAATTGGGTTTGCTCGATAAAGTCAGCTACAAAGGGAAAGAAGTTGTCATGTCTGACAGTTTCAATGTAGATAACAAATGGGTAGAGAGAGATTTCCTTAATGTAAACGAGAAGAGAGAGAATTCGTCGAAACGAGACGTTGCAGAAGATGTTGAGAGAGAAAACAAAGCAAAGAGACCAAAGCTTGAGACTTTGAATCTTTCACTAGCTTTACCTGATCCATCTCTTTCTCTCACCCCGTCAAATGCCATGCAAAATGAAGATCCAGCAGCTCCATCCAACCGTGCGAGGAGCATACAGTCTTTAGCCCCATCTAACAACAATACTAAAACCACATGTTCCAATGATGTTACAGCAGCTTCGCTCTCTTACTCGTACTCCCATCCTTTTACGCACAATCCCAGCTGCTCTTTGACGCATAATTCGACTGAAAATTTTGATTGTTTGGCTGGTAGAAATGATCAGATTTGGAATTGTGGGGAGGGGACAAACAGTTCTGTCCATAGTCGGTTTAAGCCATTGGGAGATGGGGTCACTTTATCCAATCATGGAGGTAGTCTTTTTTCGATGATGCAGGGTAATCGTATGGCGAACAAGGATTCTCATAATAATCAGAATTTACCCACTGGCTCAGATAGCCATTCCTTTTTTCCATCTGAGTTGCCTGCTAGACTAAGGATTGAAGCCCCATCTGGGGATTCAAGAGGAAGAAATTCTGAGAGTTTGGGAGGATCGGAGGGTGTAGACATTGGGAGAGTAATAAAGCTTTCTAGACCCGAGAGAATTCTTCATGAAATTGTTTTTGAATCAGTACATATTGCTAGTCAAACAATTATAGAGCTGACGAGTGAAACACTTGCAGCAACAAAGAATTACCTAAAGAATCTAATCGAAATGCCTGAAAATAGAGAGCAACTTGTAGCCCTGCAACGACAGCTAGGGCGAAGATCTGATCTTACTAAGGGAACTCTCTCAAAGTGCCAGAAAGACCATCTGGAAATCTTGGTAGCCATAAAGATGGGACTAGGAAGCTTCATAAGCGGAAAAACGTGCATCTCCCCTGCGGATCTGGTGGACATTTTCTTGCTTCTGAGATGCAGAAACTGCCGGAATATAGTGCCCGTCGATGAATGCGACTGCAAGATTTGCTCATCAAACAAAGGATTCTGCAGCTCATGCATGTGCCCTGTGTGTTTGAACTTCGATTGTGCAAACAACACTTGCAGTTGGGTCGGCTGTGATGTGTGCTCCCATTGGTGCCATGCCGCCTGTGGGATTCAGAAGAAATTTATAAGGCCAGGTCCGAGCTTGAAGGGAAGGATGGGGACGACCCAGATGCAATTTCACTGCATCGCTTGTGGCCATGCTTCGGAAATGTTTGGTTTTGTTAGGATGTTGTCCTTTGCTGTGCTAAGGACTGGGGCCATGAAACCTTGGCCAAAGAACTTGAGTGTGTGA 1548 44.06 MVAHGFQLKPFEIANSSSQELTLTYLCDNSKLGLLDKVSYKGKEVVMSDSFNVDNKWVERDFLNVNEKRENSSKRDVAEDVERENKAKRPKLETLNLSLALPDPSLSLTPSNAMQNEDPAAPSNRARSIQSLAPSNNNTKTTCSNDVTAASLSYSYSHPFTHNPSCSLTHNSTENFDCLAGRNDQIWNCGEGTNSSVHSRFKPLGDGVTLSNHGGSLFSMMQGNRMANKDSHNNQNLPTGSDSHSFFPSELPARLRIEAPSGDSRGRNSESLGGSEGVDIGRVIKLSRPERILHEIVFESVHIASQTIIELTSETLAATKNYLKNLIEMPENREQLVALQRQLGRRSDLTKGTLSKCQKDHLEILVAIKMGLGSFISGKTCISPADLVDIFLLLRCRNCRNIVPVDECDCKICSSNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQKKFIRPGPSLKGRMGTTQMQFHCIACGHASEMFGFVRMLSFAVLRTGAMKPWPKNLSV 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 259799 261346 - Bma012990.1 Bma15g00021 96143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00021 515 MobiDBLite consensus disorder prediction 68 126 - -
Bma15g00021 515 Pfam PHD - plant homeodomain finger protein 397 495 IPR032881 -
Bma15g00021 515 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 15 494 IPR004082 -
Bma15g00021 515 MobiDBLite consensus disorder prediction 100 126 - -
Bma15g00021 515 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 307 329 IPR004082 -
Bma15g00021 515 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 387 408 IPR004082 -
Bma15g00021 515 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 361 376 IPR004082 -
Bma15g00021 515 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 361 IPR004082 -
Bma15g00021 515 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 431 451 IPR004082 -
Bma15g00021 515 PANTHER PROTEIN OBERON 3 15 494 - -
Bma15g00021 515 MobiDBLite consensus disorder prediction 68 91 - -
Bma15g00021 515 CDD PHD_OBE1_like 424 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00021 - - - pper:18789922 674.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01925 Bma15g00021 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00673 Bma-Chr3:5482097 Bma15g00021 Bma-Chr15:259799 8.25E-47 dispersed
Bma09g00839 Bma-Chr9:47404380 Bma15g00021 Bma-Chr15:259799 8.74E-82 transposed
Bma14g01925 Bma-Chr14:41062146 Bma15g00021 Bma-Chr15:259799 1.51E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00021 Bma_Chr15 FPKM 15.816161 15.050869 20.956085 22.341042 15.290318 14.150822 15.960984 53.436897 50.439915 50.610863