Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00026 ATGGCGGACATTCCTGGTGACGGAGGAGAACTCAGCTATGGTAGGACGGAGGGACTACCGGTGGGGACGCCGAATCCGCCGCCCTTGACCTTGTCAGGATCGTTCAAGGATGGGAGGAGTTCCTCGAGGAGGAGAACTTCAGTGAGGCCCAGTTTGGACGCTGACGAGTTCTTAAACTTGTTACACGGCTCGGATCCGGTCAAGGTCGAGCTCAACAGGCTCGAAAATGAGGTTCGAGATAAGGACCGAGAGTTGGGAGAAGCGCAGGCGGAAATCAAGGCCTTGAGGTTTTCGGAGCGGCTAAGAGAAAAGGCAGTCGAAGAGCTCACAGAAGAACTATCAAAAGTGGACGAGAAGCTGAAATTAACAGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCATCCATGGCAGCTCAATTTGCTGCCGAGGCCACCCTTAGAAGAGTTCATGCTGCCCAGAAAGATGACGATATGCCTCCTATTGAAGCTATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCCCGACAAGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTAGATCGTCTTACGAAATCAAAGGAAGCAGCTTTACTTGAAGCTGAGAGGACTGTCCAGGTTGCTTTAGCTAAAGCCTCTATGGTGGATGACCTCCAGAATAAGAACCAAGAATTAATGAAGCAAATTGAAATCTGCCAGGAGGAAAACAAAATTTTGGACAAGATGCACAGACTAAAAGTTGCGGAGGTTGAAAAGTTAACCCAGACTGTTCGGGAGTTAGAGGAGGCAGTTCTTGCTGGTGGTGCAGCAGCAAATGCAGTGCGAGATTATCAGCGAAAAGTTCAGGAGATGAATGAGGAAAGGAAAACTCTTGACCGGGAGTTGGCCCGTGCAAAAGTAACAGCAAACAGAGTGGCTACGGTAGTGGCAAATGAATGGAAAGATGCCAACGACAAAGTTATGCCAGTAAAACAGTGGCTAGAAGAACGGAGGTTTTTACAGGCATGCTTTAATCTTCCTTTTTCCTTTTGGCTATTGATGCGTTGGAGAAGGCACTCCTCTTTCATGAAAGATTTTGGGGAAATGCAGCAGCTTCGTGACAAGCTTGCCATAACTGAGAGAACTGCAAAGTCTGAAGCACAACTGAAAGAAAAATATCAATTGCGGCTTAAAGTATTGGAGGAGAGTTTGAGGGGGTCCTCTAGTAGTAATAATTGCAGTACACCAGAGGGAAGAAGTTTAAGCAATGGTCCTTCTCGTCGCCAATCACTGGGCGGTGCAGATAACATCTCAAAACTAACGTCCAATGGGTTTCTATCCAAGAGAACTCCTACTTCCCAATTGAGATCTTTGTCCTCTAGCATGGTCTTGAAACATGCAAAGGGCACGTCAAAATCATTTGACGGAGGTACAAGGTCATTGGACCGTGGAAAAATCCTTTTAAATGGAAGCAACCTTACTTGCAGTTTCAATCAGCCTGCTGATGGAGCAAAGGAAGGTAATGCACAGAGTGAATGGAAAGGCAATCCTGAAAAGAGAAATGATTTTTCAACTGGTGATTGTGAAGAAAGTGTCCCGGTGGTTTTGTATGATTTTCTGCAAAAAGAGGTTGTATCTTTGAGAAAATCTGGTTATGAGAAAGATCAAAGCTTGAAAGATAAGGACGATGCCATCGAGATGTTGGCGAAAAAGGTAGAGACACTGAGTAAAGCAATGGAGGTTGAAGCAAAGAAGATGAGAAGAGAAGTAGCTGCCATGGAGAAGGAAGTATCTGCCATGCGAGTGGAGAAAGAACATGTGAATAGGGCCAAGCGATTTAGCAATGTCAAGGGTCCAGTTAATTCAGTTACAGCTCAGCTGCTTTCTGGAAGGTACATAAGATAA 1917 45.07 MADIPGDGGELSYGRTEGLPVGTPNPPPLTLSGSFKDGRSSSRRRTSVRPSLDADEFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRFSERLREKAVEELTEELSKVDEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQACFNLPFSFWLLMRWRRHSSFMKDFGEMQQLRDKLAITERTAKSEAQLKEKYQLRLKVLEESLRGSSSSNNCSTPEGRSLSNGPSRRQSLGGADNISKLTSNGFLSKRTPTSQLRSLSSSMVLKHAKGTSKSFDGGTRSLDRGKILLNGSNLTCSFNQPADGAKEGNAQSEWKGNPEKRNDFSTGDCEESVPVVLYDFLQKEVVSLRKSGYEKDQSLKDKDDAIEMLAKKVETLSKAMEVEAKKMRREVAAMEKEVSAMRVEKEHVNRAKRFSNVKGPVNSVTAQLLSGRYIR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 279938 284138 + Bma012995.1 Bma15g00026 96148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00026 638 Coils Coil 106 140 - -
Bma15g00026 638 Coils Coil 71 91 - -
Bma15g00026 638 Pfam Microtubule-associated protein 70 55 346 IPR009768 GO:0007010|GO:0008017
Bma15g00026 638 Pfam Microtubule-associated protein 70 364 627 IPR009768 GO:0007010|GO:0008017
Bma15g00026 638 Coils Coil 174 201 - -
Bma15g00026 638 MobiDBLite consensus disorder prediction 410 465 - -
Bma15g00026 638 Coils Coil 285 312 - -
Bma15g00026 638 Coils Coil 573 607 - -
Bma15g00026 638 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 25 346 - -
Bma15g00026 638 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 360 636 - -
Bma15g00026 638 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 25 346 IPR009768 GO:0007010|GO:0008017
Bma15g00026 638 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 360 636 IPR009768 GO:0007010|GO:0008017
Bma15g00026 638 MobiDBLite consensus disorder prediction 1 50 - -
Bma15g00026 638 Coils Coil 226 274 - -
Bma15g00026 638 MobiDBLite consensus disorder prediction 503 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00026 - - - zju:107429255 910.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01927 Bma15g00026 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00497 Bma-Chr4:4333894 Bma15g00026 Bma-Chr15:279938 0 dispersed
Bma07g00031 Bma-Chr7:1246724 Bma15g00026 Bma-Chr15:279938 3.79E-111 dispersed
Bma11g00036 Bma-Chr11:554865 Bma15g00026 Bma-Chr15:279938 3.91E-154 dispersed
Bma14g01927 Bma-Chr14:41119125 Bma15g00026 Bma-Chr15:279938 1.45E-53 wgd
Bma14g01937 Bma-Chr14:41317956 Bma15g00026 Bma-Chr15:279938 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00026 Bma_Chr15 FPKM 17.115385 17.532213 18.687763 23.661161 7.403788 7.9263 7.969581 12.653633 19.432392 21.477936