Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00027 CTTTGTTTTTGTTGTTTCATTGCTTCAGGCGCCGGACAAGAGGTCGGAAAGAGCTGCGTTGTGGTCTCCATCAATGGGAAGCGAATCATGTTTGATTGCGGCATGCACATGGGCCACCTCGACCACCGCCGATACCCTGATTTTTCTCTCATTTCCGGCCCCGGCGGAAACTTCAACGACTCTCTCTCTTGCATCATCATCACCCACTTTCATTTGGATCATGTTGGGGCCCTTCCTTACTTCACTGAAGTTTGCGGTTATACCGGACCAATTTACATGACGTATCCAACAAAGGCATTGGCGCCTTTAATGTTAGAAGATTATCGGAAAGTGATGGTTGAGCGAAGAGGTGAAGAGGAGCAATTTACCTCTGATCATATTATGCAATGCATGAGGAAAGTTATACCCGTGGATCTGAAGCAGACTGTTCAGGTTGACAAAGACCTGCAAATTCGTGCATACTATGCTGGACATTACATGATGGATTTGATCTTTAAGCGATTTTTTTTCCCTCTTCTATTGCTGATATTTTGTTTCCATTACTATTATTACATATATGAACTTGTTCTGGGTGCTGCAATGTTTTATGCAAAAGTAGGTGACAGCGCTATGGTGTACACTGGAGATTACAATATGACACCTGATAGGCATCTTGGAGCAGCTCAAATTGATCTATTACAACTGGACCTTCTTATAACAGAGTCCACGTATGCAACGACCATCCGTGATTCAAAATATGGTCGGGAGAGGGAATTTCTTAAAGCTGTTCATAATTGTGTTGCGGGTGGAGGGAAAGTACTAATTCCTACATTTGCTCTTGGACGAGCCCAGCAGGAACTCTGTATCTTGTTGGATGATTATTGGCAGCGCATGAATCTAAACGTTCCTATTTATTTCTCAGCAGGTTTGACTATTCAAGCTAATATGTATTACAAGATGCTCATCAGTTGGACCAGCCAGAGGATCAAAGAGACATACACCACACATAATGCATTTGATTTTAAAAATGTCCGTAATTTCGATCGCTCGATGATGGATGCTCCTGGACCATGTGTTCTTTTTGCTACACCTGGGATGATCAGTGGTGGTTTTTCACTCGAGGCCTTTAAGAAGTGGGCTCCTTCTGAAATGAACCTCGTCACATTGCCAGGGTACTGTGTTGCTGGAACCATTGGGCATAAATTGATGTCAGGTAAACCCACCAAAATTGAACTGGATAAGGACTCTCACATCGACATTCATCAATTGTCTTTCAGTCCACATACTGATGCAAAAGGGATCATGGATCTTGTCAAGTTTTTGAGCCCCAAGCATGTGGTTCTAGTACACGGCGAGAAACCGAAGATGGCTACTTTGAAAGGAAAAATTCATTCTGAATTGGGAATCCCATGTTATGACCCTGCAAATAATGAGGAAGGTGCATCGGAAGCAGATCTTAGTATCCTCCCAAAATACAGATTTCAAGCGTTTAATAACGAAGAGAAGGCCAATGTGGGGGTTGGTTTGATGGTTCCTGCAGAAACAAGCAGTGGATACTTGACGACCGAGAAAACACTTTTACCTGAAGATGCAGAGTGTTGTATATGTTTGAGTTCATACGAGGATGGAGCAGAGCTCAATGCTCTTCCCTGTAGCCACCATTTCCACTCTGCGTGTATCATAAAATGGCTGAAGATGAATGCTACATGTCCTCTTTGCAAATACAACATTCTCAAAGGCTGTGAGCAAGTGTAA 1734 43.02 LCFCCFIASGAGQEVGKSCVVVSINGKRIMFDCGMHMGHLDHRRYPDFSLISGPGGNFNDSLSCIIITHFHLDHVGALPYFTEVCGYTGPIYMTYPTKALAPLMLEDYRKVMVERRGEEEQFTSDHIMQCMRKVIPVDLKQTVQVDKDLQIRAYYAGHYMMDLIFKRFFFPLLLLIFCFHYYYYIYELVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDLLQLDLLITESTYATTIRDSKYGREREFLKAVHNCVAGGGKVLIPTFALGRAQQELCILLDDYWQRMNLNVPIYFSAGLTIQANMYYKMLISWTSQRIKETYTTHNAFDFKNVRNFDRSMMDAPGPCVLFATPGMISGGFSLEAFKKWAPSEMNLVTLPGYCVAGTIGHKLMSGKPTKIELDKDSHIDIHQLSFSPHTDAKGIMDLVKFLSPKHVVLVHGEKPKMATLKGKIHSELGIPCYDPANNEEGASEADLSILPKYRFQAFNNEEKANVGVGLMVPAETSSGYLTTEKTLLPEDAECCICLSSYEDGAELNALPCSHHFHSACIIKWLKMNATCPLCKYNILKGCEQV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 285755 296799 + Bma012996.1 Bma15g00027 96149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00027 577 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 8 492 - -
Bma15g00027 577 Pfam Metallo-beta-lactamase superfamily domain 22 160 IPR001279 -
Bma15g00027 577 Gene3D - 6 167 IPR036866 -
Bma15g00027 577 SUPERFAMILY Metallo-hydrolase/oxidoreductase 9 472 IPR036866 -
Bma15g00027 577 SMART Beta_Casp_2 277 395 IPR022712 -
Bma15g00027 577 CDD INTS11-like_MBL-fold 10 221 IPR041897 -
Bma15g00027 577 SUPERFAMILY RING/U-box 514 571 - -
Bma15g00027 577 Pfam Ring finger domain 525 567 IPR001841 -
Bma15g00027 577 SMART ring_2 526 566 IPR001841 -
Bma15g00027 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 573 IPR013083 -
Bma15g00027 577 Pfam Beta-Casp domain 278 395 IPR022712 -
Bma15g00027 577 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 412 465 IPR011108 -
Bma15g00027 577 ProSiteProfiles Zinc finger RING-type profile. 526 567 IPR001841 -
Bma15g00027 577 SMART Lactamase_B_5a 16 209 IPR001279 -
Bma15g00027 577 CDD RING-H2_PA-TM-RING 525 567 - -
Bma15g00027 577 Gene3D - 246 417 - -
Bma15g00027 577 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 8 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00027 K13148 CPSF3L, INTS11; integrator complex subunit 11 [EC:3.1.27.-] - pvy:116137330 774.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01932 Bma15g00027 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02653 Bma-Chr1:84018920 Bma15g00027 Bma-Chr15:285755 1.32E-21 dispersed
Bma14g01853 Bma-Chr14:39899631 Bma15g00027 Bma-Chr15:285755 4.60E-72 dispersed
Bma14g02073 Bma-Chr14:44094020 Bma15g00027 Bma-Chr15:285755 5.72E-24 dispersed
Bma15g00027 Bma-Chr15:285755 Bma15g00389 Bma-Chr15:4321863 9.72E-17 dispersed
Bma06g00085 Bma-Chr6:1352946 Bma15g00027 Bma-Chr15:285755 1.04E-10 transposed
Bma14g01932 Bma-Chr14:41238035 Bma15g00027 Bma-Chr15:285755 2.21E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g498 . . . . . Bpe10g00999 Bma14g01932 Bma15g00027 . . . . . . . . Cpe01g01827 . . . . . . . Cla05g02670 Cam05g2867 Cec05g2904 Cco05g2936 Clacu05g2871 Cmu05g2717 Cre05g2834 Cone13ag0728 . . . . . . . Blo06g01030 . . . . . . . . . Cmo15g01028 . Cma15g00981 . . Cpe13g00346 . Bhi12g00945 . . . . . . Cla01g00642 Cam01g0669 Cec01g0661 Cco01g0687 Clacu01g0658 Cmu01g0631 Cre09g1874 Lsi09g00690 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00592 . 78 544 C3H Transcription Factor Family AT2G31510 77.1 1.2e-227 785.8
Bma02g00592 . 47 523 C3H Transcription Factor Family AT2G31770 57.5 5.3e-168 587.8
Bma02g00592 . 61 545 C3H Transcription Factor Family AT2G31760 56.0 2.8e-166 582.0
Bma02g01189 . 1 195 C3H Transcription Factor Family AT3G03550 55.1 1.7e-53 206.8
Bma01g01081 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 6.6e-67 250.8
Bma01g01095 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 1.1e-66 250.0
Bma14g01059 . 2 147 C3H Transcription Factor Family AT3G02290 56.1 8.4e-38 154.1
Bma11g00486 . 1 302 C3H Transcription Factor Family AT1G11020 76.9 2.1e-135 478.8
Bma10g00653 . 39 213 C3H Transcription Factor Family AT1G50440 69.7 2.5e-66 248.8
Bma10g00693 . 54 213 C3H Transcription Factor Family AT1G50440 74.4 7.3e-66 247.3
Bma04g00005 . 1 151 C3H Transcription Factor Family AT1G22510 74.8 1.8e-60 229.2
Bma11g00888 . 1 150 C3H Transcription Factor Family AT1G22510 68.4 4.3e-54 208.0
Bma01g01081 . 1 217 C3H Transcription Factor Family AT5G38895 55.7 1.8e-65 246.5
Bma01g01095 . 1 217 C3H Transcription Factor Family AT5G38895 55.2 8.9e-65 244.2
Bma15g00848 . 19 225 C3H Transcription Factor Family AT1G19310 62.0 1.0e-72 270.0
Bma01g02302 BCT 34 225 C3H Transcription Factor Family AT1G19310 66.8 8.7e-72 266.9
Bma03g01075 . 27 232 C3H Transcription Factor Family AT1G19310 58.0 1.6e-65 246.1
Bma04g00198 BCT 22 158 C3H Transcription Factor Family AT1G19310 57.3 2.2e-38 156.0
Bma04g00005 . 1 151 C3H Transcription Factor Family AT1G72175 75.5 6.7e-60 226.9
Bma11g00888 . 5 150 C3H Transcription Factor Family AT1G72175 68.9 5.6e-51 197.2
Bma14g01646 . 8 172 C3H Transcription Factor Family AT1G26800 51.5 6.7e-47 184.1
Bma09g00052 . 1 291 C3H Transcription Factor Family AT2G22120 63.3 1.6e-107 386.3
Bma09g00054 . 1 294 C3H Transcription Factor Family AT2G22120 62.9 2.3e-106 382.5
Bma03g00018 . 1 174 C3H Transcription Factor Family AT5G07040 59.8 4.9e-45 177.6
Bma09g00653 . 1 386 C3H Transcription Factor Family AT1G18470 71.6 4.9e-161 564.3
Bma01g00153 . 1 419 C3H Transcription Factor Family AT1G18470 56.9 1.4e-131 466.5
Bma03g01542 . 124 210 C3H Transcription Factor Family AT4G33565 71.1 1.3e-37 154.1
Bma02g00592 . 47 523 C3H Transcription Factor Family AT2G31770 57.5 5.3e-168 587.8
Bma02g00592 . 61 545 C3H Transcription Factor Family AT2G31760 56.0 2.8e-166 582.0
Bma13g01130 CCT 15 265 C3H Transcription Factor Family AT5G55970 68.9 5.8e-98 354.4
Bma14g00672 CCT 1 218 C3H Transcription Factor Family AT5G55970 70.1 1.9e-93 339.3
Bma13g01130 CCT 35 324 C3H Transcription Factor Family AT4G26580 68.5 7.7e-117 417.2
Bma14g00672 CCT 1 286 C3H Transcription Factor Family AT4G26580 67.9 2.1e-114 409.1
Bma14g01579 . 10 481 C3H Transcription Factor Family AT5G01960 67.9 8.4e-169 590.1
Bma01g01704 . 1 303 C3H Transcription Factor Family AT5G01960 56.6 4.1e-75 278.9
Bma12g00872 BCT,CCT 1 150 C3H Transcription Factor Family AT2G04240 51.9 2.2e-37 152.1
Bma11g00304 BCT 3 246 C3H Transcription Factor Family AT5G19430 51.9 2.9e-60 228.8
Bma07g00282 BCT 1 221 C3H Transcription Factor Family AT5G19430 52.3 2.3e-57 219.2
Bma11g00304 BCT 1 246 C3H Transcription Factor Family AT5G12310 58.0 1.0e-60 230.3
Bma07g00282 BCT 1 221 C3H Transcription Factor Family AT5G12310 50.8 2.4e-54 209.1
Bma04g01270 . 65 224 C3H Transcription Factor Family AT5G05830 59.9 1.4e-52 203.0
Bma04g01279 . 60 219 C3H Transcription Factor Family AT5G05830 59.9 1.4e-52 203.0
Bma03g00273 . 22 208 C3H Transcription Factor Family AT5G05830 57.5 5.8e-51 197.6
Bma01g01081 . 1 217 C3H Transcription Factor Family AT5G15790 57.8 4.6e-68 254.6
Bma01g01095 . 1 217 C3H Transcription Factor Family AT5G15790 57.3 1.7e-67 252.7
Bma14g01059 . 2 147 C3H Transcription Factor Family AT5G15790 57.0 3.1e-40 162.2
Bma03g00136 . 1 274 C3H Transcription Factor Family AT3G55530 75.1 3.7e-109 391.3
Bma15g00564 . 1 273 C3H Transcription Factor Family AT1G63900 75.2 4.1e-116 414.5
Bma02g01167 . 12 397 C3H Transcription Factor Family AT2G44580 56.1 3.7e-123 438.3
Bma15g00848 . 23 150 C3H Transcription Factor Family AT1G74990 55.3 4.5e-39 157.5
Bma01g02302 BCT 34 154 C3H Transcription Factor Family AT1G74990 61.8 1.7e-38 155.6
Bma01g00903 . 10 314 C3H Transcription Factor Family AT5G20910 63.3 2.1e-108 389.0
Bma03g01075 . 30 233 C3H Transcription Factor Family AT2G23780 64.0 9.3e-74 273.5
Bma15g00848 . 16 226 C3H Transcription Factor Family AT2G23780 61.6 2.1e-73 272.3
Bma01g02302 BCT 33 235 C3H Transcription Factor Family AT2G23780 56.2 3.4e-60 228.4
Bma01g02694 . 1 321 C3H Transcription Factor Family AT3G10810 55.3 6.7e-85 311.6
Bma10g00247 BCT 56 293 C3H Transcription Factor Family AT3G10810 59.7 4.7e-70 262.3
Bma05g01183 . 1 157 C3H Transcription Factor Family AT1G63840 52.2 2.1e-43 172.2
Bma04g00881 . 1 159 C3H Transcription Factor Family AT1G63840 52.8 4.8e-43 171.0
Bma04g00888 . 1 159 C3H Transcription Factor Family AT1G63840 52.1 1.4e-42 169.5
Bma14g00604 . 1 134 C3H Transcription Factor Family AT1G63840 61.9 5.8e-41 164.1
Bma07g01660 . 1 141 C3H Transcription Factor Family AT1G63840 58.2 2.9e-40 161.8
Bma05g00824 . 1 155 C3H Transcription Factor Family AT1G63840 51.0 2.1e-38 155.6
Bma14g01932 BCT 11 364 C3H Transcription Factor Family AT1G68070 67.4 4.7e-130 461.1
Bma12g00096 . 53 355 C3H Transcription Factor Family AT1G68070 52.9 1.4e-86 316.6
Bma02g01042 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 2.3e-84 309.3
Bma15g00027 BCT 471 576 C3H Transcription Factor Family AT1G68070 72.6 2.0e-43 173.3
Bma01g01300 . 1 397 C3H Transcription Factor Family AT1G80400 54.0 1.3e-113 406.8
Bma02g00041 . 63 369 C3H Transcription Factor Family AT1G80400 60.8 9.0e-112 400.6
Bma15g00389 . 29 417 C3H Transcription Factor Family AT1G80400 54.6 4.6e-108 388.3
Bma14g01765 . 68 187 C3H Transcription Factor Family AT2G18650 63.6 4.4e-37 152.5
Bma02g00592 . 78 544 C3H Transcription Factor Family AT2G31510 77.1 1.2e-227 785.8
Bma01g02016 . 5 167 C3H Transcription Factor Family AT2G35910 58.2 2.2e-48 189.1
Bma10g00166 . 1 304 C3H Transcription Factor Family AT2G41980 76.7 4.1e-141 497.7
Bma06g01156 . 29 302 C3H Transcription Factor Family AT2G41980 75.1 1.4e-125 446.0
Bma10g01302 . 63 349 C3H Transcription Factor Family AT2G41980 68.4 6.1e-113 404.1
Bma03g00429 . 281 473 C3H Transcription Factor Family AT2G41980 77.7 6.0e-92 334.3
Bma02g01102 . 29 248 C3H Transcription Factor Family AT2G41980 58.4 1.7e-86 316.2
Bma12g01203 . 63 214 C3H Transcription Factor Family AT2G41980 80.3 1.2e-73 273.5
Bma10g00026 . 10 220 C3H Transcription Factor Family AT3G09770 66.4 2.3e-76 282.7
Bma01g00453 . 1 167 C3H Transcription Factor Family AT1G15100 50.9 4.3e-38 154.5
Bma06g01093 . 1 170 C3H Transcription Factor Family AT1G15100 50.6 5.6e-38 154.1
Bma14g01434 . 149 603 C3H Transcription Factor Family AT3G26730 56.2 5.7e-141 498.4
Bma08g00169 . 382 679 C3H Transcription Factor Family AT3G47990 71.2 1.4e-125 446.0
Bma14g00158 . 7 188 C3H Transcription Factor Family AT5G17600 51.0 9.0e-47 184.5
Bma12g00489 . 13 402 C3H Transcription Factor Family AT3G18930 50.1 2.2e-81 299.7
Bma03g00946 . 15 235 C3H Transcription Factor Family AT5G66070 71.5 6.7e-77 283.9
Bma09g00185 . 26 230 C3H Transcription Factor Family AT5G66070 76.7 3.8e-72 268.1
Bma06g00083 . 14 235 C3H Transcription Factor Family AT5G66070 67.6 6.5e-72 267.3
Bma01g00153 . 1 472 C3H Transcription Factor Family AT1G73950 54.7 7.4e-144 507.3
Bma09g00653 . 5 386 C3H Transcription Factor Family AT1G73950 63.7 6.0e-138 487.6
Bma12g00940 . 5 315 C3H Transcription Factor Family AT1G73950 52.3 3.4e-117 418.7
Bma12g00937 . 5 317 C3H Transcription Factor Family AT1G73950 51.8 4.7e-114 408.3
Bma14g01932 BCT 14 258 C3H Transcription Factor Family AT2G01735 63.8 9.3e-83 303.5
Bma05g00809 . 53 259 C3H Transcription Factor Family AT2G01735 50.2 6.8e-49 191.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003480 1 12 1 1 1 1 1 1 1 1 3 1 1 0 1 1 1 2 1 1 1 1 1 3 1 2 1 2 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00027 Bma_Chr15 FPKM 16.907724 19.382433 20.139938 18.423443 18.622871 20.658251 18.357084 14.651096 11.396154 12.879184