Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00027 CTTTGTTTTTGTTGTTTCATTGCTTCAGGCGCCGGACAAGAGGTCGGAAAGAGCTGCGTTGTGGTCTCCATCAATGGGAAGCGAATCATGTTTGATTGCGGCATGCACATGGGCCACCTCGACCACCGCCGATACCCTGATTTTTCTCTCATTTCCGGCCCCGGCGGAAACTTCAACGACTCTCTCTCTTGCATCATCATCACCCACTTTCATTTGGATCATGTTGGGGCCCTTCCTTACTTCACTGAAGTTTGCGGTTATACCGGACCAATTTACATGACGTATCCAACAAAGGCATTGGCGCCTTTAATGTTAGAAGATTATCGGAAAGTGATGGTTGAGCGAAGAGGTGAAGAGGAGCAATTTACCTCTGATCATATTATGCAATGCATGAGGAAAGTTATACCCGTGGATCTGAAGCAGACTGTTCAGGTTGACAAAGACCTGCAAATTCGTGCATACTATGCTGGACATTACATGATGGATTTGATCTTTAAGCGATTTTTTTTCCCTCTTCTATTGCTGATATTTTGTTTCCATTACTATTATTACATATATGAACTTGTTCTGGGTGCTGCAATGTTTTATGCAAAAGTAGGTGACAGCGCTATGGTGTACACTGGAGATTACAATATGACACCTGATAGGCATCTTGGAGCAGCTCAAATTGATCTATTACAACTGGACCTTCTTATAACAGAGTCCACGTATGCAACGACCATCCGTGATTCAAAATATGGTCGGGAGAGGGAATTTCTTAAAGCTGTTCATAATTGTGTTGCGGGTGGAGGGAAAGTACTAATTCCTACATTTGCTCTTGGACGAGCCCAGCAGGAACTCTGTATCTTGTTGGATGATTATTGGCAGCGCATGAATCTAAACGTTCCTATTTATTTCTCAGCAGGTTTGACTATTCAAGCTAATATGTATTACAAGATGCTCATCAGTTGGACCAGCCAGAGGATCAAAGAGACATACACCACACATAATGCATTTGATTTTAAAAATGTCCGTAATTTCGATCGCTCGATGATGGATGCTCCTGGACCATGTGTTCTTTTTGCTACACCTGGGATGATCAGTGGTGGTTTTTCACTCGAGGCCTTTAAGAAGTGGGCTCCTTCTGAAATGAACCTCGTCACATTGCCAGGGTACTGTGTTGCTGGAACCATTGGGCATAAATTGATGTCAGGTAAACCCACCAAAATTGAACTGGATAAGGACTCTCACATCGACATTCATCAATTGTCTTTCAGTCCACATACTGATGCAAAAGGGATCATGGATCTTGTCAAGTTTTTGAGCCCCAAGCATGTGGTTCTAGTACACGGCGAGAAACCGAAGATGGCTACTTTGAAAGGAAAAATTCATTCTGAATTGGGAATCCCATGTTATGACCCTGCAAATAATGAGGAAGGTGCATCGGAAGCAGATCTTAGTATCCTCCCAAAATACAGATTTCAAGCGTTTAATAACGAAGAGAAGGCCAATGTGGGGGTTGGTTTGATGGTTCCTGCAGAAACAAGCAGTGGATACTTGACGACCGAGAAAACACTTTTACCTGAAGATGCAGAGTGTTGTATATGTTTGAGTTCATACGAGGATGGAGCAGAGCTCAATGCTCTTCCCTGTAGCCACCATTTCCACTCTGCGTGTATCATAAAATGGCTGAAGATGAATGCTACATGTCCTCTTTGCAAATACAACATTCTCAAAGGCTGTGAGCAAGTGTAA 1734 43.02 LCFCCFIASGAGQEVGKSCVVVSINGKRIMFDCGMHMGHLDHRRYPDFSLISGPGGNFNDSLSCIIITHFHLDHVGALPYFTEVCGYTGPIYMTYPTKALAPLMLEDYRKVMVERRGEEEQFTSDHIMQCMRKVIPVDLKQTVQVDKDLQIRAYYAGHYMMDLIFKRFFFPLLLLIFCFHYYYYIYELVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDLLQLDLLITESTYATTIRDSKYGREREFLKAVHNCVAGGGKVLIPTFALGRAQQELCILLDDYWQRMNLNVPIYFSAGLTIQANMYYKMLISWTSQRIKETYTTHNAFDFKNVRNFDRSMMDAPGPCVLFATPGMISGGFSLEAFKKWAPSEMNLVTLPGYCVAGTIGHKLMSGKPTKIELDKDSHIDIHQLSFSPHTDAKGIMDLVKFLSPKHVVLVHGEKPKMATLKGKIHSELGIPCYDPANNEEGASEADLSILPKYRFQAFNNEEKANVGVGLMVPAETSSGYLTTEKTLLPEDAECCICLSSYEDGAELNALPCSHHFHSACIIKWLKMNATCPLCKYNILKGCEQV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 285755 296799 + Bma012996.1 Bma15g00027 96149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00027 577 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 8 492 - -
Bma15g00027 577 Pfam Metallo-beta-lactamase superfamily domain 22 160 IPR001279 -
Bma15g00027 577 Gene3D - 6 167 IPR036866 -
Bma15g00027 577 SUPERFAMILY Metallo-hydrolase/oxidoreductase 9 472 IPR036866 -
Bma15g00027 577 SMART Beta_Casp_2 277 395 IPR022712 -
Bma15g00027 577 CDD INTS11-like_MBL-fold 10 221 IPR041897 -
Bma15g00027 577 SUPERFAMILY RING/U-box 514 571 - -
Bma15g00027 577 Pfam Ring finger domain 525 567 IPR001841 -
Bma15g00027 577 SMART ring_2 526 566 IPR001841 -
Bma15g00027 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 573 IPR013083 -
Bma15g00027 577 Pfam Beta-Casp domain 278 395 IPR022712 -
Bma15g00027 577 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 412 465 IPR011108 -
Bma15g00027 577 ProSiteProfiles Zinc finger RING-type profile. 526 567 IPR001841 -
Bma15g00027 577 SMART Lactamase_B_5a 16 209 IPR001279 -
Bma15g00027 577 CDD RING-H2_PA-TM-RING 525 567 - -
Bma15g00027 577 Gene3D - 246 417 - -
Bma15g00027 577 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 8 492 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma14g01932 Bma15g00027 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02653 Bma-Chr1:84018920 Bma15g00027 Bma-Chr15:285755 1.32E-21 dispersed
Bma14g01853 Bma-Chr14:39899631 Bma15g00027 Bma-Chr15:285755 4.60E-72 dispersed
Bma14g02073 Bma-Chr14:44094020 Bma15g00027 Bma-Chr15:285755 5.72E-24 dispersed
Bma15g00027 Bma-Chr15:285755 Bma15g00389 Bma-Chr15:4321863 9.72E-17 dispersed
Bma06g00085 Bma-Chr6:1352946 Bma15g00027 Bma-Chr15:285755 1.04E-10 transposed
Bma14g01932 Bma-Chr14:41238035 Bma15g00027 Bma-Chr15:285755 2.21E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00027 K13148 - pvy:116137330 774.622