Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00028 ATGTCAAGGGAAGAACAGGTTGTGATGCGGGATGTCACCAATGCAGGGCTTGTAATCAGCGATCGGATTGGTCGAGAAGTTGCATCTCAGCTTGATTTGGAAGAAGCTCTAGAGGCTTCGAGATACTCAAGCCATCCTTATTCCACTCATCCAAGAGAGTTGCCTCCATTGGTCGAAGTAGTGGATACATGGGAGTTGCCTACAGTGCTCATTGAGCGATATAATGCCTCTGGTAGTGAGGGAACTGCCTTGTGTGGAATATTTCCAGAAATTCATAGGGCATGGGCTTCAGTGGATAACTCTTTATATCTTTGGCGCTTTGACAAGTGCGATGGTCAGTGTCCTGAGTACAGTGTAGAGGAGCAAGCTATTTGTGCTGTGGGCCTTGCCAGATCAAAGCTTGGTGTTTTTGTTGAAGCAATACAGCATCTTTTAATTTTAGCCACACCAGTAGAATTCTATGCTTTCAAGTTTAAAAACAACATTCAGTGTTTCTTATTTGTCTCCAATTTTTATCAGTTGATTCTTGTTGGAGTATGTTGCTCTACTGGTGGTAATGGTCTGGACCCTTATGCAGAGATTTCACTGCAGCCATTACCTGAGTACACCATACCATCAGATGGTGTCACCATGACTTGCATCACCTGCACTGAAAAGGGTCGTATTTTTCTGGCGGGGCGTGATGGCCACATTTATGAGCTACTCTACACATCTAGTTCAGGTTGGCAGAAGCGCTGTCGTAAAGTTTGTCTTACTGCTGGTTTAGGAAGTGCGATATCTAGGTGGGTGGTCCCTAACGTGTTTAAATTTGGAGCTGTTGATCCTATTGTGGAAATGGTTTTTGACAATGAAAGATACATTTTGTATGCTCGAACTGAGAAGATGAAACTTCAAGCATTTGTTTTGGGGCCAGATGGTGATGGTCCACTGAAGAAAGTGGCAGAAGAAAGGAATTTGGTCAATCATAAGGATGAGCATTATGGAAGTAGACAGTCTGCTGGAGCAAGATCTGCAAGTCATTCTGGAAAGGCATCTATTATTAGCATATCACCTTTATCTACTCTTGAATCAAAGTCACTACACCTTCTTGCTATTTTATCAGATGGCAGAAGGATGTACTTAACCACTTCTCCATCTAATGGAAATATAAGTGGATTTGAATCTAATCATCACAAGCCAAGCTGTTTAAAAGTAGTGGCAACCAGGCCTTCTCCTCCTCTTGGAGTTGGTGGAGGTCTTACATTTGCTGGTAGACATCAGAATGAGGACCTTTCATTGAAGGTTGAGACAGGATTTTATTCTTCTGGGACTCTTATCCTTTCAGACTCATCACCCCCAACCATCTCCACTCTCTTAATTGTAAGTCGGGATTCAGGGACACAATCTTCAATATCTAGCACTTTAACAGCAAGGAGTTCCCGTGCATTAAGGGAATCTGTATCCCACCTTCCTCTTGAGGGCCGAATGCTATATGTAGCAGATATTCAGCCGTCACCAGATATTGCAGTTTCTGTACAGTCTATATATTCAGCAATTGAATATGGTGGGATTGGAATTTTAGATGAGTCATATGGAAAAGCGATCGGAAAATTTTGGGCAAGAGGTGATCTCTCTAACCAGCATATTTTCCCAAGGCGGAGAGTAATTGTATTCAGTACCATGGGTATGATGGAAGTAGTCTTCAATAGACCTGTGGACTTATTGAGGAAGCTGTTAGAGTCTAATTCACCAAGATCAAACTTGGAAGATTTTTTCAATCGTTTTGGAGTTGGTGAAGCAGCAGCTATGTGTTTGATGCTAGCGGCAAGGATAGTTCAATCTGAAGGCCTTCTAAGTAGTGTAGTTGCTGAGAAGGCAGCTGAAGCTTTTGAGGATCCGCGAGTTGTTGGAATGCCACAACTTGAAGGAAGCGGTGCCTTGTCAAATACTAGAACAGCAGCTGGTGGGTTTAGCATGGGTCAGGTTGTTCAGGAGGCCGAGGCTCTCTTTTCTGGTGCCCATGAGGGGCTCTGTTTGTGCTCATCAAGACTGCTTTTTCCGCTCTGGGAACTTCCTGTTATGGTTGTAAAAAGTGGGTTACATTCTACAGATGCTTCAATGGAAAATGGGATAGTTGTATGTAGAGTTTCTGCTGAAGCTATGCAAGTCCTTGAAAACAAAATCCGTTCAGTAGAGAAGTTTTTAAGGTCTAGAAGGAATCAGAAGAGAGGGCTATATGGTTGTGTAGCTGGTCTGGGGGATGTTACTGGCTCCATTTTATATGGTTCAGAATTAGTTTCTGGTGACCGTAGCATGGCAAGAAACCTCTTTGGAGCATACCCCCGTAATGTTGACTCTAATGGAAATAGAACATCTAGTAAGAGGCAGAGATTACCATATAGTCCCGCTGAACTGGCTGCCATGGAGGTGAGGGCAATGGAATGTATCAGGCAATTGCTTCTTAGAGCTGCCGAAGCTCTATTTTTTCTTCAGCTGCTTTCTCAGCATCATGTGGCACGCTTGGTTCAGGGGTTGGATTCTATATTGCGACAAGCAATAGTCCAATTGACATTTCACCAACTTGTTTGTTCGGAGGAGGGTGATCAACTTGCTACAAGACTTATTTCGGCCTTGATGGAGTTTTACACAGGTCCTGATGGCAGGGGCACAGTAGATGATATAAGTGCGAGGTTAAGAGAGGGTTGTCCTAGTTATTACAAAGAATCTGATTACAAATTTTTCTTGGCTGTGGAATCCCTAGAGAGAGCTGCTGTGACTTTGGACCCTATTGCAAAGGAGAATCTTGCTAGAGAAGCTTTCAATTTCCTTAGTAAAGTTCCAGAGTCTGCAGATTTGAAAACTGTTTGCAAGCGTTTCGAGGATTTGAGATTTTATGAAGCAGTGGTTCAGTTATCTCTTCAAAAGGCACAGGCTCTTGATCCTGCTGGGGATGCTCTCAATGATGAAATCAATTTAGCTCTTCGAGAACGTGCAATTGCTCGGCGTGAGCAGTGTTATGAGATAATTATCAGTGCTTTGCAATCTTTGAAAGGTGACAATTCTCAAAAGGAATTTGGGTCATCTTCGAGGCAAGGAGTTGCTCAATCTGCAATTGATCAGGCATCTCGAAAGAAATTCATACGTCAAATTGTGCAGCTTAGTGTCCAATCGCGTGACAAAATATTTCATGATTATTTATATCGAGCTATGATTGTTTTGGGCTTTGAAAACGAGTTGTTGGAGTATGGAGGATCTGATTTGGTCCCTTTTCTACAAAATGCTGGCAGTAAACCTATACAAGAAGTTCGAGCTGTTTCAGCAATTACATCAGCGACTTCTCCATTGGGTCCATCAGCAGCACCTATTCAATCTGATCAAGTGAAATTTTTTGATCTTTTGGCTAGATATTACGTCATGAAGCGAGAGCATTTGCTTGCTGCTCATGTATTGCTACGACTCGCTGAGAGACGCCCTAGTGACACTGGGGATGTTCCAACATTGGAGCAAAGGTGTCAATATTTAAGTAACGCAGTTCTACAAGCAAAGAATGGTAGTAACAGCAATGGTTTGATGGGCTCTACTCGAGGTGCATTAGACACTGGACTGCTAGATTTGCTTGAAGGCAAGCTTGCAGTTCTTCGGTTTCAGATTAAGATAAAAGACGAGCTAGATGGGATAGCCTCTAGGTTTGAAGCTCTGTCCAACACGTCTGCGTCTGATCAAAATGGATTGCTCCCTGATAGTATTTTGGCTTCCAATGCTGATGTTGCAAATACTGCACGACAAAAGGCAAAAGAGTTATCATTAGATATAAAGAGCATAACCCAACTGTACAATGACTATGCTGTTCCATTTGAGCTATGGGAGATATGTTTGGAAATGTTATACTTTGCAAATTATTCTGGTGATGCGGATAGTACTATCATAAGGGAAACTTGGGCACGACTTATTGATCAGGCTATCTCCAAAGGTGGCATTGCTGAAGCTTGTTCGACACTGAAGAGGGTTGGTTCTCATCTATATCCTGGCGAGGGAGCTGGTGTACCATTAGAAACTCTTTGTCTCCACCTTGAGAAGGCTTCACTGGAGAGATTAGATTCAGGTATTGAACCAATTGGAGATGAAGATGTTGCCAGAGCTCTGCTTGCTGCTTGTAAGGGTGCAACTGAGCCTGTATTGAACGCATATGATCTATTGTTATCAAATGGAGCTATTTTGCCTTCACCTAAACTTCGATTGAGGCTTCTCCGATCAGTATTAGTCGTGTTACGTGAGTGGGCAATGTCATTAGTTGCACAGAGAGTGGGTACTAGTGCAATTGGAGCTTCTCTAATACTAGGTGGAACGACACCACTTGCGCAAACTGCTGTTAGCCAGCGGTTCCGAGACAAGATCACGAGCGCTGCTAACAGGTACATGGCAGAAGTCCGGCGGTTAGCTCTTCCGCAGAGTCTAGCAGAGATTGTTTACAGTGGGTTCCGAGAACTAGAAGAGTCAGTGATAAGCCCTTACTCTTTGGATCAATTTTGA 4509 43.14 MSREEQVVMRDVTNAGLVISDRIGREVASQLDLEEALEASRYSSHPYSTHPRELPPLVEVVDTWELPTVLIERYNASGSEGTALCGIFPEIHRAWASVDNSLYLWRFDKCDGQCPEYSVEEQAICAVGLARSKLGVFVEAIQHLLILATPVEFYAFKFKNNIQCFLFVSNFYQLILVGVCCSTGGNGLDPYAEISLQPLPEYTIPSDGVTMTCITCTEKGRIFLAGRDGHIYELLYTSSSGWQKRCRKVCLTAGLGSAISRWVVPNVFKFGAVDPIVEMVFDNERYILYARTEKMKLQAFVLGPDGDGPLKKVAEERNLVNHKDEHYGSRQSAGARSASHSGKASIISISPLSTLESKSLHLLAILSDGRRMYLTTSPSNGNISGFESNHHKPSCLKVVATRPSPPLGVGGGLTFAGRHQNEDLSLKVETGFYSSGTLILSDSSPPTISTLLIVSRDSGTQSSISSTLTARSSRALRESVSHLPLEGRMLYVADIQPSPDIAVSVQSIYSAIEYGGIGILDESYGKAIGKFWARGDLSNQHIFPRRRVIVFSTMGMMEVVFNRPVDLLRKLLESNSPRSNLEDFFNRFGVGEAAAMCLMLAARIVQSEGLLSSVVAEKAAEAFEDPRVVGMPQLEGSGALSNTRTAAGGFSMGQVVQEAEALFSGAHEGLCLCSSRLLFPLWELPVMVVKSGLHSTDASMENGIVVCRVSAEAMQVLENKIRSVEKFLRSRRNQKRGLYGCVAGLGDVTGSILYGSELVSGDRSMARNLFGAYPRNVDSNGNRTSSKRQRLPYSPAELAAMEVRAMECIRQLLLRAAEALFFLQLLSQHHVARLVQGLDSILRQAIVQLTFHQLVCSEEGDQLATRLISALMEFYTGPDGRGTVDDISARLREGCPSYYKESDYKFFLAVESLERAAVTLDPIAKENLAREAFNFLSKVPESADLKTVCKRFEDLRFYEAVVQLSLQKAQALDPAGDALNDEINLALRERAIARREQCYEIIISALQSLKGDNSQKEFGSSSRQGVAQSAIDQASRKKFIRQIVQLSVQSRDKIFHDYLYRAMIVLGFENELLEYGGSDLVPFLQNAGSKPIQEVRAVSAITSATSPLGPSAAPIQSDQVKFFDLLARYYVMKREHLLAAHVLLRLAERRPSDTGDVPTLEQRCQYLSNAVLQAKNGSNSNGLMGSTRGALDTGLLDLLEGKLAVLRFQIKIKDELDGIASRFEALSNTSASDQNGLLPDSILASNADVANTARQKAKELSLDIKSITQLYNDYAVPFELWEICLEMLYFANYSGDADSTIIRETWARLIDQAISKGGIAEACSTLKRVGSHLYPGEGAGVPLETLCLHLEKASLERLDSGIEPIGDEDVARALLAACKGATEPVLNAYDLLLSNGAILPSPKLRLRLLRSVLVVLREWAMSLVAQRVGTSAIGASLILGGTTPLAQTAVSQRFRDKITSAANRYMAEVRRLALPQSLAEIVYSGFRELEESVISPYSLDQF 1502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 302134 316607 + Bma012997.1 Bma15g00028 96150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00028 1502 PANTHER BNAC05G49530D PROTEIN 2 153 - -
Bma15g00028 1502 Gene3D - 906 1065 IPR042533 -
Bma15g00028 1502 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 158 1498 IPR004870 GO:0005643|GO:0006913|GO:0017056
Bma15g00028 1502 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 153 IPR004870 GO:0005643|GO:0006913|GO:0017056
Bma15g00028 1502 Gene3D Nucleoporin, helical domain, central subdomain 1069 1171 IPR042537 -
Bma15g00028 1502 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 887 1309 IPR007187 -
Bma15g00028 1502 Pfam Nup133 N terminal like 54 557 IPR014908 -
Bma15g00028 1502 Gene3D - 1198 1435 IPR042538 -
Bma15g00028 1502 Gene3D - 545 895 - -
Bma15g00028 1502 PANTHER BNAC05G49530D PROTEIN 158 1498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00028 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - qsu:112033963 2287.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01933 Bma15g00028 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01933 Bma-Chr14:41254035 Bma15g00028 Bma-Chr15:302134 3.17E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g495 . . . . . . Bma14g01933 Bma15g00028 . . . . . . . . . Bhi07g00386 . . . . . . Cla07g00539 Cam07g0580 Cec07g0641 Cco07g0607 Clacu07g0584 Cmu07g0619 Cre07g0955 . . . . Lsi04g01104 . . Cme10g01618 . . Bda07g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00028 Bma_Chr15 FPKM 18.766666 20.802452 18.966076 22.710581 16.032078 20.135286 19.087423 15.396031 15.472317 19.797533