Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00046 ATGCAGGCTGTAAATTCAGCAGGAAAGAGGGGAGGATCAAGATTTGTCATTTATGTGAAATCCGGTGTTTATAAAGAAAATGTTGTGATCAAGAAGACGATAAAGAATATTATGATTATTGGAGATGGAACTGATTCCACCATTGTTACAGCCGACAACAACGCTGAAGATGGGTCTACCACTTTTCGTTCTGCCACCATTGGAATCTCAGGAGATGGATTCATAGCACAAGACATAACCTTTGAGAACACCGCCGGACCACAAAAACAGCAGGCGGTAGCCGTCCGGTCAAGCTCCGACCACTCCGTCTTCTACCGGTGCAGCATCAAGGGATACCAAGACACCCTCTACGTGTACTCGCAGCGGCAATTCTACCGAGACTGCGACATTTATGGGACCATCGACTTCATCTTTGGAAACGCCGTCGCCGTCATCCAAAACTGCAACATCTACGTAAGAAAACCGATGGGGAACCAGCAAAATACGGTTACAGCGCAAGGGAGAACCGACCCAAATGAGAACACCGGAATCATAATCCATAACTCACGTATAACCGCTTCGTCGGACCTCCGGCCGTCGCAAAATTCTTTCAAAACTTTTCTTGGCCGGCCATGGCAGAAATACTCGAGGACTGTAATTATGAAAACGGTACTCGACGGTTTGATCGATCCGGCGGGTTGGGCACAGTGGAGTGGGGGTTTCGCATTGAGTACTCTTTACTATGGCGAGTACATGAATACTGGGGCCGGGGCTAATACTGAGCGGAGAGTGAAATGGGGAGGGTTTCGGGTTATAACGAGTCCGCTGGAGGCCGGAAAGTTCACAGTAGGGAACTTTCTGGCAGGGTGGGTCGTGGATTCCGGCAACCGGAGTTCCGTTCGCGGCGGGTTTATGACGGAAAAGATGAAATATTTCAGGTTAGTGTGA 927 48.98 MQAVNSAGKRGGSRFVIYVKSGVYKENVVIKKTIKNIMIIGDGTDSTIVTADNNAEDGSTTFRSATIGISGDGFIAQDITFENTAGPQKQQAVAVRSSSDHSVFYRCSIKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGNAVAVIQNCNIYVRKPMGNQQNTVTAQGRTDPNENTGIIIHNSRITASSDLRPSQNSFKTFLGRPWQKYSRTVIMKTVLDGLIDPAGWAQWSGGFALSTLYYGEYMNTGAGANTERRVKWGGFRVITSPLEAGKFTVGNFLAGWVVDSGNRSSVRGGFMTEKMKYFRLV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 641122 642399 - Bma013020.1 Bma15g00046 96168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00046 308 Gene3D - 1 291 IPR012334 -
Bma15g00046 308 SUPERFAMILY Pectin lyase-like 2 282 IPR011050 -
Bma15g00046 308 ProSitePatterns Pectinesterase signature 1. 11 30 IPR018040 -
Bma15g00046 308 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 2 288 - -
Bma15g00046 308 ProSitePatterns Pectinesterase signature 2. 130 139 IPR033131 -
Bma15g00046 308 Pfam Pectinesterase 2 282 IPR000070 GO:0030599|GO:0042545
Bma15g00046 308 PANTHER PECTINESTERASE 2 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00705 Bma-Chr10:10678874 Bma15g00046 Bma-Chr15:641122 4.60E-101 dispersed
Bma15g00046 Bma-Chr15:641122 Bma15g00533 Bma-Chr15:6156349 9.78E-117 dispersed
Bma15g00046 Bma-Chr15:641122 Bma10g00665 Bma-Chr10:9604969 4.50E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00046 - - nnu:104607345 452.981