Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00051 ATGTTTAATGACCATAGATCAGGAATTAAAAACCAAGAAGAGACTACTTTAGACTATGATTATGGCCTTGAGATTGCAAATGTGCCTTCGGGAGAGAGGTCATCGAGAGTCCCATTGGCACCTTTATCTAAACCATCACCGTCGAAATGGGATGATGCCCAAAAATGGATAGCTAGTCCAACTTCAAACAGGCAGAAGGCTGGGCAGTCTCAGGGGCAAGTAGTTGGATCAAGGAAAGTCAGTGGATTTGGTCATGGGGCTCCATATCCGTCCACAAAGGTTGTTGTTGAAGTTCCTGATGAAAAGATGGCGGCTTTTGAAGAACCAGAAACTAAACAGATGGATACCAATCAAACCAAGTTGGAAAGAGATGGTCATAAGTTTGTTAGTTGGGAAGATCACCCTCATCTATATCCAATTGGAGATTCTTATGCAAAGCCTGTACTCATGTTTGAAAACTCCGTTAGAGAGTGTGCAATAAATCTAAGCCGGTACGATGCATCTGTGGGCATGCAAAGTGAAACTACATTAATTCCTTCTCCTTCAACAGCACGGTCCGTATCAATGAGAGATATGGGTACAGAAATGACACCCATTGCAAGCCAAGAACCTTCAAGAACCGGAACTCCTTTGAGAGCGACGACTCCAATGCGCAGTCCAACTTCTTCTCGACAATCAACCCCCAAGAGATCTGCACCAACTCCATCTCCCATCAACCCCCCTTTACCAAATAACCAAGTGCTTCCAAACAAGGAGATGTCTGAGAAGGAGCTGCAAGTTAAGACAAGGAGGGAGATAATGGTTTTAGGTACACAGTTGGGAAAAATGAATATTGCTGCCTGGGCTAGCAAAAAGGAGGAAGACAAGGATGCTTCTAGCTCGCTTAAAACTATAGCCACTCCACAGGTGGCTAAAAGTGTTATTGAGACACGTGCCGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATACATCAAGGTTCAAACGTGAAGAACTGAAGATTGAAGCATGGGAAAATCACCAGAAAGCAAAAGCTGAGGCTGAAATGAAGAAAATGGAGGTGGAGGTGGAGAGGATGAGGAGCCGAGCACAGAATAAGCTCGCGAGTAAATTAGCATCAGTATGCCAGAAAGCAGAAGAAAAGCGAGCAAATGCAGAGGCGAAGAGAAGCCTGGAAGCAGTAAAAACAGAGCAACAAGTGGATTACATTCAAAGAACTGGACGTATTCCTTCTGGATGTCCCTGTTGTTGGTGA 1254 44.74 MFNDHRSGIKNQEETTLDYDYGLEIANVPSGERSSRVPLAPLSKPSPSKWDDAQKWIASPTSNRQKAGQSQGQVVGSRKVSGFGHGAPYPSTKVVVEVPDEKMAAFEEPETKQMDTNQTKLERDGHKFVSWEDHPHLYPIGDSYAKPVLMFENSVRECAINLSRYDASVGMQSETTLIPSPSTARSVSMRDMGTEMTPIASQEPSRTGTPLRATTPMRSPTSSRQSTPKRSAPTPSPINPPLPNNQVLPNKEMSEKELQVKTRREIMVLGTQLGKMNIAAWASKKEEDKDASSSLKTIATPQVAKSVIETRAAAWEEAEKAKYTSRFKREELKIEAWENHQKAKAEAEMKKMEVEVERMRSRAQNKLASKLASVCQKAEEKRANAEAKRSLEAVKTEQQVDYIQRTGRIPSGCPCCW 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 673307 676125 - Bma013025.1 Bma15g00051 96173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00051 417 MobiDBLite consensus disorder prediction 28 86 - -
Bma15g00051 417 Pfam Remorin, C-terminal region 308 411 IPR005516 -
Bma15g00051 417 MobiDBLite consensus disorder prediction 198 232 - -
Bma15g00051 417 PANTHER OS02G0116800 PROTEIN 31 415 - -
Bma15g00051 417 MobiDBLite consensus disorder prediction 1 20 - -
Bma15g00051 417 Coils Coil 342 397 - -
Bma15g00051 417 MobiDBLite consensus disorder prediction 195 250 - -
Bma15g00051 417 PANTHER OS02G0116800 PROTEIN 31 415 - -
Bma15g00051 417 MobiDBLite consensus disorder prediction 55 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00051 - - - zju:107429597 499.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01623 Bma15g00051 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01519 Bma-Chr4:51219942 Bma15g00051 Bma-Chr15:673307 1.69E-12 dispersed
Bma09g00998 Bma-Chr9:49491872 Bma15g00051 Bma-Chr15:673307 3.92E-27 dispersed
Bma11g00890 Bma-Chr11:33624689 Bma15g00051 Bma-Chr15:673307 3.89E-35 dispersed
Bma14g01623 Bma-Chr14:34219764 Bma15g00051 Bma-Chr15:673307 0 dispersed
Bma15g00051 Bma-Chr15:673307 Bma15g00305 Bma-Chr15:2942900 1.03E-23 dispersed
Bma15g00240 Bma-Chr15:2415279 Bma15g00051 Bma-Chr15:673307 8.82E-13 dispersed
Bma15g00051 Bma-Chr15:673307 Bma14g01602 Bma-Chr14:33537039 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00051 Bma_Chr15 FPKM 7.465045 8.36972 6.439245 6.594252 20.75971 21.834293 22.877563 6.508303 5.665324 6.553267