Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00052 ATGGACGCTAAAATTCACGGCTGGGGCACTAACGTTTCGACTGATTGCTGCGTCTGGCCTGGAGTCACTTGCAATTCTTCGTCGACTATGGGGGTTAACGTTACTTTAGAGACTGGTAGAGTTGTGAAGATCGACCTTGGTGGAAAGAAGCTAACGGGGAAACTTTCTGACTCCATTGGCCGGCTGGAGCAGCTTCAACATCTCAATCTCTCTCAAAATTTTCTAAAGAGTTCGATTCCTTCTTCGTTGTTCCAGCTGCCTAAATTGGAGGTACTCGACCTAAGTTCCAATGATTTAACCGGGGTTATTCCGGCGACCTTCAATCTACCTGCGATTCAGCTGCTTGATTTATCTCAGAACTACTTGAGTGACTCTCTCCCACCTTATTTATGCCATAACTCTTCCAGAATTAGGGTGTTGGATCTGGGTTTCAACTATTTCTCCGGCAGTTTACCTCCGGGAATTGGCAACTGCACCTTCTTAGAAACCTTCTCTCTGGAGACTAATGACCTCACCGGCAACATTCCCGACGACTTATTCTGGCTGCAAAAATTGACCTTGTTGAGCCTCCGAGACAACCTGTTTTCAGGACAGCTGAACGAGCTGATTGGTAATCTCCCAAACCTTGTTCGCCTGGATATTGCTTACAATAGATTTTCAGGAGAAATTCCAGATGTTTTTTACACCTCCAAAAATTTGCAGTTCTTAGTGTTCGAATCTAACAATTTCACTGGACAAATACCGAATTCGTTATCTAGTTCTCCGACGATAAATCTCCTAAACTTGAGGAACAATTCTTTAACGGGTCTTATCGATATTAACTGTTCAGCCATGGCTAACCTGACCTCTCTTGATTTGGGAACTAATTGGTTTTACGGTCCTGTTCCGAGCAATCTTCCAACTTGTCGACGGCTAAAAAACATAAATCTAGCCCGAAATAACTTCACTGGAGATATCCCTGCAACCTTCAAGCATTTTCAGACCCTTTCTTATCTTTCACTGTCCAATTCAAGCATAGTCAATCTCCACTCTGCACTTGACATCTTGCAGCACTGCAAGAACTTGAGCACTTTAGTCCTTACCCGGAACTTCCAGGATGAAGAGCTGCCTTCTGATCCTACCCTTAATTTCGAAAACCTCAAGGTTTTGATTATAGCCAGTTGTAGACTAAAGGGTGTAATGCCAGAATGGTTGAGGCGGAGTTCGAAATTGCAGTTGTTGGATTTGTCGTGGAACAGACTGGGCGGATCGATTCCGGACTGGTTTGGTGATTTTCAGTCTCTTTTTTACTTGGATTTATCGAACAATTCATTTACAGGAGAGATTCCAATAACCATAACTAGATTGCCGAGCCTTATTAGTCGACATATTTACTTCGAAGAACCTTCTCCGGATTTCCCTTTTTTTTTGAAAAGAAATGTTAGTGAACCATTGAAGTACACTCAAGTTTTGAGTTTTCCTCCCACCCTGGAGCTTAGCAACAACAATCTGAGTGGACCAATCTGGCCGGATTTTGGGAATCTGAGTAAGCTCCATGTCTTGGATCTGAAATTCAATAATCTTTCAGGAGAAATTCCGAGCTCTTTATCAGGGATGACTAGCCTGGAGACTTTGGATTTGTCGCATAATAAGCTTACCGGAACAATACCACAATCATTAGTGAGTCTGAGTTTCTTGTCCAAGTTCAGTGTTGCTTACAATCAGTTAAGTGGGGTAATTCCTTCAGGTGGTCAGTTTCAAACCTTCCCTAATTCAAGCTTTGAAGGAAATAATCTCTGTGGTGAACATGCTTCTCCTTGTCGGACAAATGATCAAAGCTTATTTACATCACCTGGAAGATCAAGATGGAGCCAAGGAAGTATCATTGGTATGGCTGTTGGGATTTCGTTTGGAACTGCTTTCCTTCTTGTTCTGCTGATTCTGATTGGGCTCTGGACTCGTAACAGAAGAAATGTAGATCTCGAAAGAGAGGTGGCTAACTCTAATGATAAGGATTTAGAGGAACTTGGTTCAAAACTGGTAGTTTTGTTCCAAAACAAGGAGAACAATAAAGGACTCACCATAGACGATCTTTTGAAGTTAACCGACAATTTTGACCAGGCAAACATAATCGGGTGCGGGGGTTTCGGCCTTGTTTACAGAGCCACCCTGCTTGATGGTAGGAGAGTTGCGATCAAGCGGCTCTCGGGCGATTGCGGACAGATAGAAAGAGAGTTTCGTGCAGAAGTTGAAACTCTCTCCAGAGCTCAGCATCCTAATCTTGTTCTTCTTCAGGGATATTGCATTTATAGAAACGACAGGCTTTTGATATATTCTTACATGGAGAATGGCAGTTTGGATTATTGGTTGCACGAAAAATTTGATGGCCCTTCTTGTCTAAGTTGGGAGATGAGGCTCCGAATTGCTCAAGGGGCTGCAAGGGGACTAGCTTACTTACACCAATCATGTGAGCCGCATATCCTTCATCGAGACATCAAATCGAGCAACATCCTTTTAGACGAGAATTTCACTGCCCACTTGGCCGATTTTGGTCTCGCTAGGCTCATACTTCCTCACGATACACACGTGACGACTGATCTAGTCGGGACTTTAGGCTACATTCCGCCCGAGTATGGGCAAGCCTCGGTTGCTACTTACAAGGGAGATGTCTATAGTTTTGGAGTCGTTCTTTTGGAACTTTTGACCGGAAAAAGGCCGATGGATATATGCAAGCCTAAAGAATGTCGGGATTTGATCTCTTGGGTGTTCCAGATGAAGAAGGAAGGCAAGGAAACCGAAGTTTACGATCCTTTCACTTACGAAAAGCATCACAGCAAGCAAATGTCGCGGGTTCTTGAAATAGCATGTCTTTGTCTGAACGAATATCCAAAAAGTCGCCCTTCAACGCAGCAGCTAGTTTCTTGGCTCGACAACATCATCTAG 2922 43.53 MDAKIHGWGTNVSTDCCVWPGVTCNSSSTMGVNVTLETGRVVKIDLGGKKLTGKLSDSIGRLEQLQHLNLSQNFLKSSIPSSLFQLPKLEVLDLSSNDLTGVIPATFNLPAIQLLDLSQNYLSDSLPPYLCHNSSRIRVLDLGFNYFSGSLPPGIGNCTFLETFSLETNDLTGNIPDDLFWLQKLTLLSLRDNLFSGQLNELIGNLPNLVRLDIAYNRFSGEIPDVFYTSKNLQFLVFESNNFTGQIPNSLSSSPTINLLNLRNNSLTGLIDINCSAMANLTSLDLGTNWFYGPVPSNLPTCRRLKNINLARNNFTGDIPATFKHFQTLSYLSLSNSSIVNLHSALDILQHCKNLSTLVLTRNFQDEELPSDPTLNFENLKVLIIASCRLKGVMPEWLRRSSKLQLLDLSWNRLGGSIPDWFGDFQSLFYLDLSNNSFTGEIPITITRLPSLISRHIYFEEPSPDFPFFLKRNVSEPLKYTQVLSFPPTLELSNNNLSGPIWPDFGNLSKLHVLDLKFNNLSGEIPSSLSGMTSLETLDLSHNKLTGTIPQSLVSLSFLSKFSVAYNQLSGVIPSGGQFQTFPNSSFEGNNLCGEHASPCRTNDQSLFTSPGRSRWSQGSIIGMAVGISFGTAFLLVLLILIGLWTRNRRNVDLEREVANSNDKDLEELGSKLVVLFQNKENNKGLTIDDLLKLTDNFDQANIIGCGGFGLVYRATLLDGRRVAIKRLSGDCGQIEREFRAEVETLSRAQHPNLVLLQGYCIYRNDRLLIYSYMENGSLDYWLHEKFDGPSCLSWEMRLRIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDENFTAHLADFGLARLILPHDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDICKPKECRDLISWVFQMKKEGKETEVYDPFTYEKHHSKQMSRVLEIACLCLNEYPKSRPSTQQLVSWLDNII 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 688185 691106 - Bma013026.1 Bma15g00052 96174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00052 973 Gene3D Ribonuclease Inhibitor 109 199 IPR032675 -
Bma15g00052 973 Gene3D Ribonuclease Inhibitor 298 608 IPR032675 -
Bma15g00052 973 Pfam Protein kinase domain 700 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00052 973 PANTHER RECEPTOR-LIKE PROTEIN 55 161 972 - -
Bma15g00052 973 PANTHER RECEPTOR-LIKE PROTEIN 55 41 171 - -
Bma15g00052 973 SUPERFAMILY Protein kinase-like (PK-like) 682 969 IPR011009 -
Bma15g00052 973 ProSiteProfiles Protein kinase domain profile. 698 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00052 973 SUPERFAMILY L domain-like 11 273 - -
Bma15g00052 973 SMART LRR_typ_2 425 456 IPR003591 -
Bma15g00052 973 SMART LRR_typ_2 508 531 IPR003591 -
Bma15g00052 973 SMART LRR_typ_2 62 86 IPR003591 -
Bma15g00052 973 SMART LRR_typ_2 109 133 IPR003591 -
Bma15g00052 973 SMART LRR_typ_2 532 556 IPR003591 -
Bma15g00052 973 SMART LRR_typ_2 206 230 IPR003591 -
Bma15g00052 973 Gene3D Phosphorylase Kinase; domain 1 658 773 - -
Bma15g00052 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Bma15g00052 973 Pfam Leucine Rich Repeat 64 83 IPR001611 GO:0005515
Bma15g00052 973 PRINTS Leucine-rich repeat signature 89 102 - -
Bma15g00052 973 PRINTS Leucine-rich repeat signature 532 545 - -
Bma15g00052 973 Gene3D Transferase(Phosphotransferase) domain 1 774 972 - -
Bma15g00052 973 Gene3D Ribonuclease Inhibitor 200 297 IPR032675 -
Bma15g00052 973 ProSiteProfiles Leucine-rich repeat profile. 64 86 IPR001611 GO:0005515
Bma15g00052 973 Gene3D Ribonuclease Inhibitor 2 108 IPR032675 -
Bma15g00052 973 PANTHER OSJNBB0004A17.8 PROTEIN 41 171 - -
Bma15g00052 973 PANTHER OSJNBB0004A17.8 PROTEIN 161 972 - -
Bma15g00052 973 CDD STKc_IRAK 704 972 - -
Bma15g00052 973 SUPERFAMILY L domain-like 179 582 - -
Bma15g00052 973 ProSiteProfiles Leucine-rich repeat profile. 534 557 IPR001611 GO:0005515
Bma15g00052 973 SMART serkin_6 698 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00052 973 ProSitePatterns Protein kinases ATP-binding region signature. 704 726 IPR017441 GO:0005524
Bma15g00052 973 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Bma15g00052 973 Pfam Leucine rich repeat 379 437 IPR001611 GO:0005515
Bma15g00052 973 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00942 Bma-Chr13:40154326 Bma15g00052 Bma-Chr15:688185 9.03E-06 dispersed
Bma15g00052 Bma-Chr15:688185 Bma15g00826 Bma-Chr15:20290663 1.48E-06 dispersed
Bma15g00052 Bma-Chr15:688185 Bma04g00111 Bma-Chr4:880559 3.86E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66930 PF00069 Pkinase 5.80E-44 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00052 - - pvy:116113986 1357.04