Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00053 ATGGCGTCGGCTCCGACTGGTTGCTTCAAGTGCGGTAGACCAGGTCATTGGTCTCGCGATTGCCCTTCCTCTTCTGCTCCAAATCCTAATTCTACTTCTGCGCTTCTCGATTCCTCCAAATCTTCTTCGTTTGTTCGCAATGTCAGCGGCGGTGGAGCTGGTGGCTCTTCCACACCAGTGGAGAAGCCCAAGAAGCTACCCAGGACTCGCCCCAAGCTTACTCCTGAGCTTCTTGTTTCGGACGACGGCCTTGGCTACGTTCTTCGCCATTTCCCTCGCGCATTCAAGTATCGTGGTCCAGGGCACGAGGTTAGTGATCTCGGCAATTTAATTGGACTCTACAGCGAATGGCATTCATGTCTACTCCCTTATTTCTCATTTCATCAGTTTGTACAAAAGGTGGAACAAGTTGGTTCAACAAAACGCTTGAAGATGTGTCTTAGAGAACTGAGAGAAAAGGTTGAGAATGGAGTGGATCCAACAAAGTTGCATGAACCTGTTATTCATGATGATCTAAACGAGAATCAAGAAGCCATAGACTCTCATATCTTAAGCAATGACCAGACAGACCACTCTTTGAGAAACGATGATGCTGATGTTTTACAAGAAAACTTGCTTCAAGAAATATACCAGAAAGCTACTGAAGAACCTTTGCAAAATGTCGAAAAGGACGTCGTTGCTGTGGGTGGAGATTTTACGAACAAGGGCGAGGAAGGTTCAGCCAATCAATCAAAAAATGTAGCCGAAATTACGCTGACCGAAGAACAAAGAGCCAGAATGGAAGCAAGCAGGGTCAAGGCACTTGAAAGAGCTGCTGCAAGGATTCGCCCTTTGCAGGCTGCTTGA 846 46.81 MASAPTGCFKCGRPGHWSRDCPSSSAPNPNSTSALLDSSKSSSFVRNVSGGGAGGSSTPVEKPKKLPRTRPKLTPELLVSDDGLGYVLRHFPRAFKYRGPGHEVSDLGNLIGLYSEWHSCLLPYFSFHQFVQKVEQVGSTKRLKMCLRELREKVENGVDPTKLHEPVIHDDLNENQEAIDSHILSNDQTDHSLRNDDADVLQENLLQEIYQKATEEPLQNVEKDVVAVGGDFTNKGEEGSANQSKNVAEITLTEEQRARMEASRVKALERAAARIRPLQAA 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 710461 712734 + Bma013027.1 Bma15g00053 96175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00053 281 PANTHER TIMELESS-INTERACTING PROTEIN 1 277 - -
Bma15g00053 281 SUPERFAMILY Retrovirus zinc finger-like domains 5 25 IPR036875 GO:0003676|GO:0008270
Bma15g00053 281 Gene3D - 3 70 - -
Bma15g00053 281 MobiDBLite consensus disorder prediction 1 74 - -
Bma15g00053 281 ProSiteProfiles Zinc finger CCHC-type profile. 8 23 IPR001878 GO:0003676|GO:0008270
Bma15g00053 281 Pfam Replication Fork Protection Component Swi3 72 153 IPR012923 GO:0005634|GO:0006974|GO:0048478
Bma15g00053 281 PANTHER TIMELESS INTERACTING-RELATED 1 277 IPR040038 GO:0000076
Bma15g00053 281 Pfam Zinc knuckle 7 23 IPR001878 GO:0003676|GO:0008270
Bma15g00053 281 SMART c2hcfinal6 7 23 IPR001878 GO:0003676|GO:0008270
Bma15g00053 281 MobiDBLite consensus disorder prediction 21 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00053 K10904 TIPIN; TIMELESS-interacting protein - csv:101222555 307.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00053 Bma-Chr15:710461 Bma03g00063 Bma-Chr3:515368 8.85E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1072 . . . . . . . Bma15g00053 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0663 Cone19ag0660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011426 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00053 Bma_Chr15 FPKM 7.220694 7.560601 2.069703 2.719074 6.727259 8.792784 7.976805 0.187055 0.0 0.167017