Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00065 ATGGCTGCATCTTCTTCATCAGTACCATTTCTGGGAATTAGAGAAGAAGAGCAAAACCAGATGAGGCAGCAACATTCATCCACGCCCAGCTCATCAGCAACTCCAGCTGCACCAGCACAGAAGAAAAAGAGGAATCAACCAGGAACACCAAGCCCAGATGCAGAGGTAATAGCGCTATCTCCAAAAACACTAATGGCCACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACATAACTTACCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGGAAGGTTTATCTCTGTCCTGAGCCCACATGCGTCCACCATGAGCCTTCAAGAGCCCTAGGCGACCTTACAGGAATCAAAAAACACTACTCTCGTAAACATGGGGAGAAGAAATGGAAGTGCGAGAAGTGTTCCAAAAGATACGCCGTTCAGTCTGATTGGAAGGCTCATTCTAAAACCTGTGGAACGAGGGAGTATCGATGCGACTGTGGCACTCTTTTCTCAAGGCGAGACAGCTTCATCACACACCGGGCTTTTTGCGACGCGTTAGCTCAAGAAACTGCGAGACACCCGCCAACCTTGCCGAACTCCATTGGAAGCCATTTGTATGGAGTTGGAAGCAATGTAGGCTTAGGTTTATCTCAAGTGGGTCAGCAAATCTCTTCCTTACAAGATCAAACCAATCAATCAACCGACATTTTACGCCTCGGAGGTGGCGGAGGACGGCCCGGGCAATTCAACAATCTCTTGAGCCTTTCTCAACAAGGGTTGCTGCCAAACAAATCATTTCATGGGCTGATGCAATTTTCTGACCTCCAATCCAATCCAACCAATTCTCCAAATGCCAATCTCTTCAACCTAGGGTTCTTGTCGAATTCGAGCAACAACACCGGAAACAACAACGACAATAGTAACATCTTGATGTCTAATCAGTTCAACATCGGACAGAACGGAAATGATAGCGAAACTACGAATGTATATGCAATGGGGGATCAAATGGGCTCCAATTCAGTTCCTTCTCTATACACAACTTCAATTGAAAACAACACCAGTATTCCTCACATGTCAGCCACTGCTCTACTTCAAAAGGCTGCTCAATTAGGCTCAACCACATCGGCCAACAACACGAGCGCCTCTTTGCTTCGATCGTTCGGAAGCACTTCCTCCGGCGGACCGAAATCGGAAAGGCCGATTCTTCCTACTAATATGAACGCCATTTTCAGCGAGAACGAGCACCACCATCTGCAGGACCTGATGAACTCATATTCCACCGGAAACTCCGCCTTCTTCTCCAGCGGGTCCGGAGGAATCACCGCGTTTGGCGGGTATGAAGGAAGCAGAAGCAACATAGAAAATTTGGAAGAACCAAAACTTCATCAAACTCCATCAGTGAGCATTGGAGGATCAGATGGATTAACAAGAGATTTCTTAGGAGTTGGACAAATTGTCAGAAGTATGAGCGGGGGGTATTCTCAAAGAGAACAAAAACAACAACAACAACAACAACAACATGAATCGATCACGTTGGTTCCATTAATACAGATCAGAGCAACAACGCAGCAGCTCCTTTCAGCCAATCCTACGGAGGAGGAAGAAGAAGTTTTCAATGAAAGACGACACAGATTACATGAAAAAGAAGGTACGTACTTGAAATTTAAGTATTATTTGGTTGAAAAGATTAATGAAAAACCAAATACAACGTGGATTTGGTTGGTAAATGTGTCTTCTTGA 1773 45.01 MAASSSSVPFLGIREEEQNQMRQQHSSTPSSSATPAAPAQKKKRNQPGTPSPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARHPPTLPNSIGSHLYGVGSNVGLGLSQVGQQISSLQDQTNQSTDILRLGGGGGRPGQFNNLLSLSQQGLLPNKSFHGLMQFSDLQSNPTNSPNANLFNLGFLSNSSNNTGNNNDNSNILMSNQFNIGQNGNDSETTNVYAMGDQMGSNSVPSLYTTSIENNTSIPHMSATALLQKAAQLGSTTSANNTSASLLRSFGSTSSGGPKSERPILPTNMNAIFSENEHHHLQDLMNSYSTGNSAFFSSGSGGITAFGGYEGSRSNIENLEEPKLHQTPSVSIGGSDGLTRDFLGVGQIVRSMSGGYSQREQKQQQQQQQHESITLVPLIQIRATTQQLLSANPTEEEEEVFNERRHRLHEKEGTYLKFKYYLVEKINEKPNTTWIWLVNVSS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 786924 790842 - Bma013038.2 Bma15g00065 96187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00065 590 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Bma15g00065 590 Gene3D Classic Zinc Finger 122 203 - -
Bma15g00065 590 SMART c2h2final6 70 92 IPR013087 -
Bma15g00065 590 SMART c2h2final6 111 141 IPR013087 -
Bma15g00065 590 SMART c2h2final6 146 166 IPR013087 -
Bma15g00065 590 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Bma15g00065 590 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Bma15g00065 590 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Bma15g00065 590 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 509 - -
Bma15g00065 590 MobiDBLite consensus disorder prediction 1 55 - -
Bma15g00065 590 Gene3D Classic Zinc Finger 51 120 - -
Bma15g00065 590 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 509 - -
Bma15g00065 590 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00065 Bma-Chr15:786924 Bma15g01004 Bma-Chr15:39068700 5.37E-110 dispersed
Bma15g00065 Bma-Chr15:786924 Bma10g00024 Bma-Chr10:346417 7.92E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58449 PF12171 zf-C2H2_jaz 3.60E-05 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00065 K25870 - jre:109006348 663.299