Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00077 ATGGACGGGAGTTGCACTGATGAAAGCACGGCGAGTGAATCCACCTCTATTTCTCCTGTGACTCCGCTGGCTTTTCTGGCTACTAAGGGCTCTTCCCCGCCGGAGGCTCGGTGCCGTATGGGCGCCGGAACGAGTGTCGTTGTCCACTCCGATCAGTCGTGCGGTGTGGAAGCGGAGTCAAGAAAGCTCCCCTCCTCCAGGTTCAAAGGGGTGGTGCCGCAGCCCAATGGGCGGTGGGGGGCGCAGATTTATGAAAAGCACCAACGGGTCTGGCTCGGCACTTTTAACGAGGAGGACGAGGCAGCCCGAGCGTACGATGTCGCCGCTCAAAGATTCCGCGGCCGCGATGCTGTCACCAATTTCAAGCCGCTTGCCGACACTGCCGACGACGACGTCGAGTTGGAGTTTCTCAATTCCCATTCGAAATCCGAGATCGTTGATATGCTACGTAAGCATACCTACAGCGATGAACTGCAGCAGAGCAAACGTAGAAATGGGTTACTAAACGGCTATGGCAACCGAACAAGAGCCGTTGGCCTAACCGGCGCCGGACAGGACAATGATTCCAAGGAACGTGAGTTGCTTTTCGAAAAGGGGGTGACCCCTAGCGACGTCGGAAAATTGAACCGTCTAGTGATCCCCAAGCAATATGCCGAGAAGCACTTCCCGTTGCAGAGCGGCGCCGCCTCATCCAAAGGCATCCTTCTCAACTTCGAGGATGTTGGAGGAAAAGTATGGCGGTTCCGCTACTCGTATTGGAACAGCAGCCAAAGCTACGTTCTAACAAAAGGGTGGAGCCGATTCGTCAAGGAGAAGAACCTCCATGCTGGAGACATAGTCAGCTTCCTCCGATCTACCGGACCGGAGAAACAGCTGTACATTGACTTCAAGGATCGGAATGGACGGGCGGTGGTGGCTGGATTTTCGAACCCAAAGCCACCGGTTCAGATAGTGAGACTATTTGGGGTGAATATTTTCAAAGTACCTGGAAATGGTATTGGTAGTCTAGATAGCGCCGCCTCAACTGGTGGCTGCCATGGGAAGAGAATAAGAGATCAAGTAGAGCTTATAGGTTTAGAGTACAGTAAAAAGCAAAGGGTAATCGGAGCTCTGTAA 1116 53.41 MDGSCTDESTASESTSISPVTPLAFLATKGSSPPEARCRMGAGTSVVVHSDQSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLADTADDDVELEFLNSHSKSEIVDMLRKHTYSDELQQSKRRNGLLNGYGNRTRAVGLTGAGQDNDSKERELLFEKGVTPSDVGKLNRLVIPKQYAEKHFPLQSGAASSKGILLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLHAGDIVSFLRSTGPEKQLYIDFKDRNGRAVVAGFSNPKPPVQIVRLFGVNIFKVPGNGIGSLDSAASTGGCHGKRIRDQVELIGLEYSKKQRVIGAL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 893677 894792 - Bma013051.1 Bma15g00077 96199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00077 371 Pfam B3 DNA binding domain 196 298 IPR003340 GO:0003677
Bma15g00077 371 Pfam AP2 domain 67 114 IPR001471 GO:0003700|GO:0006355
Bma15g00077 371 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 371 - -
Bma15g00077 371 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Bma15g00077 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 371 IPR044800 GO:0003700
Bma15g00077 371 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Bma15g00077 371 SUPERFAMILY DNA-binding pseudobarrel domain 193 298 IPR015300 -
Bma15g00077 371 SMART B3_2 196 300 IPR003340 GO:0003677
Bma15g00077 371 Gene3D - 184 306 IPR015300 -
Bma15g00077 371 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Bma15g00077 371 MobiDBLite consensus disorder prediction 1 22 - -
Bma15g00077 371 ProSiteProfiles B3 DNA-binding domain profile. 196 300 IPR003340 GO:0003677
Bma15g00077 371 CDD B3_DNA 195 282 IPR003340 GO:0003677
Bma15g00077 371 MobiDBLite consensus disorder prediction 1 34 - -
Bma15g00077 371 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Bma15g00077 371 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00157 Bma15g00077 CCT
Bma01g00157 Bma15g00077 ECH
Bma14g01697 Bma15g00077 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00157 Bma-Chr1:1471963 Bma15g00077 Bma-Chr15:893677 4.11E-155 dispersed
Bma11g00635 Bma-Chr11:10967369 Bma15g00077 Bma-Chr15:893677 8.31E-53 dispersed
Bma14g01697 Bma-Chr14:36122169 Bma15g00077 Bma-Chr15:893677 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58451 PF02362 B3 2.30E-27 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00077 K09287 - pvy:116107511 492.271