Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00079 ATGGCGAAAATGGGTGCTCTGTTTTTCTTTCTCTTTCTCGCTGCTGAACTTGTCCACGGTCGGCAGCTCAGTGAGATCTCTAAAACCTCTTTTCTTGATGTGGCGGCGTCGATTGAGAATACCAAACAAGTGTTTACTTCTCCGGCGGCAAAAACCACTGCTGAAGACGGTGGGTTGGAGCAAGAAGAACACCGGAGCTTTTCCGGTTCATCTAAGCTATCCCTGCGGCTACAATCACGAATTTCTCTTCAGAAATCGCCGCACAGTGACTACAAGTCACTGACTTTAGCTCGACTCGAGCGCGACTCGGCCCGTGTCAGATCTTTGACTGCGAGAGTAGATCTAGCAGTTACAGGGATTTCGGCGGCAGATCTTATGCCGATGGAAGATGGCGGGGGTTTGCAGTTCGGTGAGGAGGAGTTGGAAGGTCCAATCGTTTCAGGGGCTAGTCAAGGTAGCGGAGAGTACTTCTCCCGACTGGGTATCGGCCGACCGCCGAGTCCAGTTTACATGGTTTTAGACACCGGAAGTGATGTAAATTGGGTTCAGTGCGCGCCGTGCGCCGACTGCTATCAGCAAGCGGATCCGATCTTCCAGCCGGCTTCATCAACGTCTTTCTCGCCGCTATCGTGCGAAACCCAACAGTGCCAATCTCTCGAAGTGTCACAGTGTCGGAATGGAACTTGTCTGTACGAGGTTTCCTACGGCGACGGCTCCTACACCGTCGGCGACTTCGTCACCGAGACAATCAGCCTAGGATCGACTTCCGTCGATAACATCGCCATCGGGTGCGGTCACAACAATGAGGGTTTGTTTGTCGGTGCAGCTGGTTTACTCGGGCTCGGCGGTGGACCACTCTCTTTCCCTTCCCAACTAAAAACGACATCTTTTTCATACTGCCTCGTCGACAGGGACTCTCAGTCTGCATCCACGCTAGAATTCGGGTCGTCGATTCCGCCGAATGCCGTCACAGCTTCGTTGCAGCGGAATCCAGTACGCGACACTTTTTACTATCTGGGTGTCACGGGACTCAGTGTCGGCGGCGAGCAACTCCAACTTCCCGAATCGTCGTTCAACGTGGACGGAAATGGAAAGGGTGGGATTATTATTGATTCCGGCACGGCAGTCACAAGATTACCGACGGCTGTATACAACACCCTCCGCGACGCCTTTGTGAAGGGCGCGACCAATTTGCCGTCCACTACCGGTGTTTCACTATTCGACACTTGTTACGACTTGGCGTCTAGGACTAGCGTGGAGGTACCGACAGTGGCGTTCAATTTCGCCGACGGTAAAGTTCTGAAGTTACCGGCGAAGAATTACCTGATTCCGGTAGATTCCTCCGGGACGTTTTGCTTCGCATTTGCGCCGACCGCCTCCTCATTGGGAATCATAGGGAACGTCCAGCAGCAGGGCACACGTGTCAGTTTCAATCTTGCCGACTCCCTTATTGGATTCTCTCCCAATGGATGTTAG 1476 53.12 MAKMGALFFFLFLAAELVHGRQLSEISKTSFLDVAASIENTKQVFTSPAAKTTAEDGGLEQEEHRSFSGSSKLSLRLQSRISLQKSPHSDYKSLTLARLERDSARVRSLTARVDLAVTGISAADLMPMEDGGGLQFGEEELEGPIVSGASQGSGEYFSRLGIGRPPSPVYMVLDTGSDVNWVQCAPCADCYQQADPIFQPASSTSFSPLSCETQQCQSLEVSQCRNGTCLYEVSYGDGSYTVGDFVTETISLGSTSVDNIAIGCGHNNEGLFVGAAGLLGLGGGPLSFPSQLKTTSFSYCLVDRDSQSASTLEFGSSIPPNAVTASLQRNPVRDTFYYLGVTGLSVGGEQLQLPESSFNVDGNGKGGIIIDSGTAVTRLPTAVYNTLRDAFVKGATNLPSTTGVSLFDTCYDLASRTSVEVPTVAFNFADGKVLKLPAKNYLIPVDSSGTFCFAFAPTASSLGIIGNVQQQGTRVSFNLADSLIGFSPNGC 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 903422 904897 - Bma013053.1 Bma15g00079 96201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00079 491 MobiDBLite consensus disorder prediction 47 71 - -
Bma15g00079 491 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 171 182 IPR001969 GO:0004190|GO:0006508
Bma15g00079 491 Gene3D Acid Proteases 138 315 IPR021109 -
Bma15g00079 491 Gene3D Acid Proteases 316 491 IPR021109 -
Bma15g00079 491 PANTHER ASPARTYL PROTEASES 9 491 IPR001461 GO:0004190|GO:0006508
Bma15g00079 491 ProSiteProfiles Peptidase family A1 domain profile. 156 487 IPR033121 -
Bma15g00079 491 Pfam Xylanase inhibitor C-terminal 337 487 IPR032799 -
Bma15g00079 491 SUPERFAMILY Acid proteases 150 491 IPR021109 -
Bma15g00079 491 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 491 - -
Bma15g00079 491 Pfam Xylanase inhibitor N-terminal 156 316 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00079 K22683 APF2; aspartyl protease family protein [EC:3.4.23.-] - zju:107429488 650.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01103 Bma-Chr2:52692015 Bma15g00079 Bma-Chr15:903422 4.17E-117 dispersed
Bma03g00888 Bma-Chr3:8691902 Bma15g00079 Bma-Chr15:903422 3.94E-160 dispersed
Bma04g00913 Bma-Chr4:12490114 Bma15g00079 Bma-Chr15:903422 2.25E-113 dispersed
Bma07g01201 Bma-Chr7:46790014 Bma15g00079 Bma-Chr15:903422 1.15E-76 dispersed
Bma08g00839 Bma-Chr8:46290591 Bma15g00079 Bma-Chr15:903422 8.13E-129 dispersed
Bma10g00636 Bma-Chr10:8733732 Bma15g00079 Bma-Chr15:903422 4.48E-80 dispersed
Bma15g00079 Bma-Chr15:903422 Bma03g00461 Bma-Chr3:3484120 4.75E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00079 Bma_Chr15 FPKM 6.196121 8.216844 12.890808 14.292472 12.33709 11.760288 11.661323 13.986734 15.885444 15.609906