Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00082 ATGTATCCCTTGCCGGAGAATGTACTGCAGCCATCAGCACCGCCACTCGAACCGCCGTATTTTACCGCCTTTGAAAAACCGATCGGTTCCAGCACCAACTACACTTTTTCGAATCCTCCTGTCTACTCCCATGACATGAATTCTCATTCCCCAACGCCTTGGTCGACGGGTCTTTGTAGTTGTTGTAGTGAAATTAATAGTTGTTGTTTGACATGCTGGTGTCCGTGTGTAGCGTTTGGTCGAATTGCAGAAATTGTTGACAGAGGATCGACAACATGTGGAGTAAGTGGAGCAATCTACATGGCGATTTTAGGGTTAACGGGTTGTCCATGTTTATACTCTTGCCTCTATCGATCCAAATTAAGAGCACAGTACTTCGTAGAAGAAACTCCCTGCACAGATTGCTGCGTCCATTGCTGCTGCGAGGAATGTGCTTTGTGTCAAGAATACAGACACCTTCAAAACCAAGGCTTTGATCTCTCTATAGGGTGGCATGGAAACGTGGAGAGGCAAAAGAGGGTGGCTAAGATGCTTCCTATGGCGGTTGAAGCAATGTCTAAGAACTAG 567 46.38 MYPLPENVLQPSAPPLEPPYFTAFEKPIGSSTNYTFSNPPVYSHDMNSHSPTPWSTGLCSCCSEINSCCLTCWCPCVAFGRIAEIVDRGSTTCGVSGAIYMAILGLTGCPCLYSCLYRSKLRAQYFVEETPCTDCCVHCCCEECALCQEYRHLQNQGFDLSIGWHGNVERQKRVAKMLPMAVEAMSKN 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 919908 921041 + Bma013056.1 Bma15g00082 96204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00082 188 PANTHER DUF614 FAMILY PROTEIN-RELATED 26 186 IPR006461 -
Bma15g00082 188 PANTHER PLAC8 MOTIF-CONTAINING PROTEIN-RELATED 26 186 - -
Bma15g00082 188 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 53 154 IPR006461 -
Bma15g00082 188 Pfam PLAC8 family 54 152 IPR006461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00082 - - - jre:109002569 240.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01899 Bma15g00082 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00949 Bma-Chr3:10072211 Bma15g00082 Bma-Chr15:919908 1.25E-07 dispersed
Bma09g00945 Bma-Chr9:48808734 Bma15g00082 Bma-Chr15:919908 3.30E-21 dispersed
Bma14g01899 Bma-Chr14:40626929 Bma15g00082 Bma-Chr15:919908 5.90E-31 dispersed
Bma15g00082 Bma-Chr15:919908 Bma04g00959 Bma-Chr4:14905267 7.01E-14 dispersed
Bma15g00082 Bma-Chr15:919908 Bma05g01235 Bma-Chr5:51753254 1.97E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g282 . . . . . . Bma14g01899 Bma15g00082 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0844 Cone19ag0848 . . . Csa05g02069 Chy10g01128 Cme10g00278 . . Bda07g01713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00082 Bma_Chr15 FPKM 16.954035 21.072119 10.977948 10.248868 16.123528 16.053871 14.223932 23.765282 20.70393 20.092697