Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00083 ATGGCTGTGGTAGATGAGCCGCTGTATCCAATAGCTCTCCTCATTGACGAGCTGAAAAATGATGACATCCAGCTGAGGCTGAACTCGATTCGTAGTCTTTCTACAATTGCACGTGCTTTAGGGGAGGAACGAACCCGGAAAGAATTAATTCCATTTTTAAGTGAAAACAATGACGATGATGATGAGGTGCTTCTTGCACTGGCAGAGGAGTTGGGAGTGTTTACTCCATATGTTGGGGGAGTAGAGTATGCTTATATCTTGCTCCCGCCATTGGAAACCCTTTGCAGCGTTGAGGAAACATGCGTTAGAGATAAATCTGTGGAGTCTTTGTGCAAAATTGGATCTCGGATGAGGGAAAATGATTTGGTTGACTGGTTCATTCCTCTTGTTAAGAGATTGGCTGCTGGTGAATGGTTTACAGCTAGAGTTTCTGCTTGTGGGTTATTTCATATTGCGTACCCTAGTGCTCCAGAGATGTTAAAAACAGAGTTGCGATCAATATATCGCCAATTGTGTCGAGATGACATGCCAATGGTTAGGAGATCTGCAGCAATGAGTTTGGGGAAATTCGCTGCAACTGTTGAACCTGCTCATCTGAAGATTGAGATCATGTCAATCTTTGAAGACCTTACTCAGGATGATCAAGATTCTGTTCGATTGTTGGCTGTTGAAGGTTGTGCCTCGCTTGGGAAATTGTTGGAGCCTCAAGATTGCGTTGCTCATATACTTCCTGTGATAGTTAGCTTCTCTCAGGATAAGTCTTGGCGAGTTCGTTACATGGTTGCTAATCAATTGTATGAACTTTGTGAAGCTGTGGGGCCTGAGCCCACCAGGACTGACTTGGTGCTGTCATATGTTCGTTTGCTTCGAGACAATGAGGCTGAGGTTCGAATAGCAGCTGCTGGCCAAGTAACCAAATTTTGCAAGATATTAAACCCAGTATTGGCAATTCAACACATTCTTCCCTGTGTGAAGGAACTGTCATCAGATTCCTCGCAGCATGTCCGGTCTGCTTTAGCTTCAGTTATAATGGGCATGGCCCCTGTATTGGGAAAGGACGCAACAATCGAGCTGCTCCTTCCAATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGGTTGAATATCATTAGCAAGCTCAATCAAGTTAATCAGGTCATTGGAATCGATCTCCTATCACAATCATTGTTACCCGCCATAGTTGAGCTTGCCGAGGATAAACATTGGCGAGTTCAGCTTGCAATAATAGAATATATTCCTTTGCTGGCGAGCCAGTTGGGTGTTGGGTTTTTGGATGATAAGCTTGGTGCCCTTTGCATGCAATGGTTGCAAGATAAGGTTTACTCAATTCGTGATGCAGCTGCAAACAACTTAAAGCGACTAGCAGAAGAATTTGGTCCTGATTGGGCAATGCAGCACATTATCCCACAGGTGGCTGAGAAGACAATCCGGCCCTGCCTAGTTGAACTCAGCGAGGACCCAGATGCAGATGTCCGTTTTTTCGCCAACCAAGCGCTCCGTACTATTGACAATGTCATAATGTCTAGCTAG 1557 44.64 MAVVDEPLYPIALLIDELKNDDIQLRLNSIRSLSTIARALGEERTRKELIPFLSENNDDDDEVLLALAEELGVFTPYVGGVEYAYILLPPLETLCSVEETCVRDKSVESLCKIGSRMRENDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYRQLCRDDMPMVRRSAAMSLGKFAATVEPAHLKIEIMSIFEDLTQDDQDSVRLLAVEGCASLGKLLEPQDCVAHILPVIVSFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVLSYVRLLRDNEAEVRIAAAGQVTKFCKILNPVLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIELLLPIFLSLLKDEFPDVRLNIISKLNQVNQVIGIDLLSQSLLPAIVELAEDKHWRVQLAIIEYIPLLASQLGVGFLDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPDWAMQHIIPQVAEKTIRPCLVELSEDPDADVRFFANQALRTIDNVIMSS 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 923736 929289 - Bma013057.1 Bma15g00083 96205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00083 518 SUPERFAMILY ARM repeat 8 511 IPR016024 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Bma15g00083 518 Pfam HEAT repeats 361 461 - -
Bma15g00083 518 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Bma15g00083 518 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 480 518 - -
Bma15g00083 518 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 1 481 - -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Bma15g00083 518 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 480 518 - -
Bma15g00083 518 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 481 - -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Bma15g00083 518 Gene3D - 3 513 IPR011989 -
Bma15g00083 518 ProSiteProfiles HEAT repeat profile. 485 518 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00083 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - nnu:104601618 863.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01701 Bma15g00083 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01701 Bma-Chr14:36150620 Bma15g00083 Bma-Chr15:923736 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g284 . . . . . Bpe10g00941 Bma14g01701 Bma15g00083 . Cmo18g01047 . Cma18g01033 . Car18g00957 Sed06g1871 Cpe09g00286 . Bhi07g01346 Tan04g0883 Cmetu10g0865 . Hepe01g1208 . . Cla05g02316 Cam05g2488 Cec05g2512 Cco05g2554 Clacu05g2483 Cmu05g2346 Cre05g2462 . . . . Lsi04g00273 Csa05g02596 . Cme10g00276 Blo06g01049 Blo11g00833 Bda07g01529 . Bpe11g01692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00083 Bma_Chr15 FPKM 3.065728 3.092695 0.0 0.357191 0.0 0.08646 0.0 0.33525 0.284115 0.245387