Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00085 ATGAAGATTTTTGTGAAGACTCTCAAAGGAGCGCACTTCGAAATTGAAGTTCAGCCCGAGGATACGGTTTCTGACGTGAAGAAAAACATCGAAGCCGTTCATGGTTCTGATGTTTATCCTGCTGCACAATTGATGCTCATTCATCAAGGGAAGGTCCTTAAAGATGGATCCACTCTATCTGAAAATAAAGTTGCTGAAAATAGTTTTGTTGTTGTTATGTTGAGCAAGAATAAGAGCTCATCTAGTGAGACTTCAACCACACGAGCTACTCCTCCAATGAAGGCCCCAGAGACAAGCGCCGTGCCTCCTGCCCCAACTCCTGTGGTTACTGCACCACCGGCACCTGAAGCAATCTCAGCTCCCAGCTCGGATGCTGACGTATATGGCCAAGCAGCATCTAATCTGGTTGCTGGCACTAACTTGGAGCAGACCATACAACAAATTCTTGACATGGGTGGAGGAACCTGGGATAGGGATACTGTTATTCGAGCTTTGCGTGCTGCATACAACAATCCTGAGAGAGCTGTTGAATATCTATATTCTGGTATACCGGAGCAAGCTGAAGTTCCACCAGTGGCTCGGGTTCCTCCTCCTGGTCCCGCTGCAACTCCTCAAGTGCAGCCTCCACAGCCAATACAGGCGGCAACTGTTCCGTCAAGTGGTCCAAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCCAGCGTAGGTGCAGGCGCTCCTGGTGCAGGAAATCTTGATTTTTTGCGCAACAGTCAGCAGTTTCAAGCTTTGAGGGCTATGGTGCAGGCTAACCCACAGATTTTACAGCCAATGCTTCAAGAGCTAGGTAAACAAAATCCGTTTCTTATGAGGCTAATTCAAGAGCATCATGCTGACTTCCTCCGGCTTATTAATGAGCCTGTTGAAGGAGGAGAAGGGAATATACTCGGGCAGCTTGCAGCAGCAATGCCACAGTCTGTGACTGTAACACCTGAAGAGCGAGAAGCAATTCAACGGCTTGAAGCGATGGGGTTTGATAGGAATATTGTTTTGGAAGTTTTCTTCGCCTGCAACAAGAACGAGGAGCTGGCTGCAAACTACCTTTTAGATCACATCCATGAATTTGAGGATTGA 1119 47.54 MKIFVKTLKGAHFEIEVQPEDTVSDVKKNIEAVHGSDVYPAAQLMLIHQGKVLKDGSTLSENKVAENSFVVVMLSKNKSSSSETSTTRATPPMKAPETSAVPPAPTPVVTAPPAPEAISAPSSDADVYGQAASNLVAGTNLEQTIQQILDMGGGTWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEVPPVARVPPPGPAATPQVQPPQPIQAATVPSSGPNANPLDLFPQGLPSVGAGAPGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPFLMRLIQEHHADFLRLINEPVEGGEGNILGQLAAAMPQSVTVTPEEREAIQRLEAMGFDRNIVLEVFFACNKNEELAANYLLDHIHEFED 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 948331 956353 - Bma013060.1 Bma15g00085 96207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00085 372 Gene3D - 320 367 - -
Bma15g00085 372 Gene3D - 238 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bma15g00085 372 SMART ubq_7 1 75 IPR000626 GO:0005515
Bma15g00085 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 371 - -
Bma15g00085 372 Pfam UBA/TS-N domain 328 363 IPR015940 -
Bma15g00085 372 Pfam UBA/TS-N domain 141 179 IPR015940 -
Bma15g00085 372 MobiDBLite consensus disorder prediction 199 220 - -
Bma15g00085 372 Pfam XPC-binding domain 247 302 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bma15g00085 372 PRINTS DNA repair protein Rad23 signature 339 353 IPR004806 GO:0006289
Bma15g00085 372 PRINTS DNA repair protein Rad23 signature 354 369 IPR004806 GO:0006289
Bma15g00085 372 PRINTS DNA repair protein Rad23 signature 273 295 IPR004806 GO:0006289
Bma15g00085 372 PRINTS DNA repair protein Rad23 signature 322 338 IPR004806 GO:0006289
Bma15g00085 372 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bma15g00085 372 MobiDBLite consensus disorder prediction 96 114 - -
Bma15g00085 372 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 371 - -
Bma15g00085 372 CDD UBA1_Rad23_plant 135 184 - -
Bma15g00085 372 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Bma15g00085 372 Gene3D - 1 80 - -
Bma15g00085 372 TIGRFAM rad23: UV excision repair protein Rad23 1 371 IPR004806 GO:0006289
Bma15g00085 372 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bma15g00085 372 MobiDBLite consensus disorder prediction 76 123 - -
Bma15g00085 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 139 182 IPR015940 -
Bma15g00085 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 325 366 IPR015940 -
Bma15g00085 372 SUPERFAMILY UBA-like 309 370 IPR009060 GO:0005515
Bma15g00085 372 MobiDBLite consensus disorder prediction 76 93 - -
Bma15g00085 372 Gene3D - 134 184 - -
Bma15g00085 372 SUPERFAMILY XPC-binding domain 243 309 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bma15g00085 372 SUPERFAMILY UBA-like 139 191 IPR009060 GO:0005515
Bma15g00085 372 SMART uba_6 141 181 IPR015940 -
Bma15g00085 372 SMART uba_6 328 365 IPR015940 -
Bma15g00085 372 SMART CBM 245 288 IPR006636 -
Bma15g00085 372 CDD Ubl_Rad23 1 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00085 K10839 RAD23, HR23; UV excision repair protein RAD23 - csin:114298454 518.079
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01707 Bma15g00085 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00085 Bma-Chr15:948331 Bma15g00427 Bma-Chr15:4630676 1.03E-111 dispersed
Bma14g01707 Bma-Chr14:36193700 Bma15g00085 Bma-Chr15:948331 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00085 Bma_Chr15 FPKM 7.228352 6.7063 10.083041 10.200143 19.043266 19.520401 20.887922 50.607044 49.279732 55.7467