Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00097 CAGCTGAGAATTTTGTCCAACAGTTTTGGGGTCCAAGCTGAGATTGATAAGATGACTGCTCAAGAAATTATGGACGCTAAAGCTCTTGCTGCTTCAAAGAGTCATAGCGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGAACTTTACTACCTAGCACCACCAAGACAGATAAAGCTTCACTACTAGCGGAGGTAATACAACACGTAAAAGAACTAAAGCGACAGACTTCGTTGATCGCCGAAACAAATCTAGTTCCGACTGAAAACGACGAGCTCACAGTCGATGCTTCCGACGATGACGGAAAGTTTGTAATCAGAGCGTCAATTTGCTGCGATGATCGGTCCGATCTTTTGCCCGACCTGATAAAAACCCTAAAATCACTCCGTTTAAGAACCCTAAAAGCGGAGATCACGACGATTGAAGGAAGAACGAAGAACGTGCTATTTATAACTGGAGACGACGATTCCAGTGGAGAGGGGGAAGAGCAGGAGCAGCTGTATTGTATAAGCTCAATTCAAGAAGCACTAAAGGCAGTAATGGAGAAGACAAGAGGGGATGATTCAAATAATCCTTCAACACTTGTTAAGAGGCAAAGAACCAGTAATGTCAATACCCTT 639 43.19 QLRILSNSFGVQAEIDKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRTLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETNLVPTENDELTVDASDDDGKFVIRASICCDDRSDLLPDLIKTLKSLRLRTLKAEITTIEGRTKNVLFITGDDDSSGEGEEQEQLYCISSIQEALKAVMEKTRGDDSNNPSTLVKRQRTSNVNTL 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1059794 1061389 + Bma030765 Bma15g00097 96219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00097 213 Gene3D - 24 89 IPR036638 GO:0046983
Bma15g00097 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 86 IPR036638 GO:0046983
Bma15g00097 213 Pfam Helix-loop-helix DNA-binding domain 33 79 IPR011598 GO:0046983
Bma15g00097 213 MobiDBLite consensus disorder prediction 188 213 - -
Bma15g00097 213 PANTHER TRANSCRIPTION FACTOR BHLH30 7 212 - -
Bma15g00097 213 MobiDBLite consensus disorder prediction 192 213 - -
Bma15g00097 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 79 IPR011598 GO:0046983
Bma15g00097 213 SMART finulus 36 85 IPR011598 GO:0046983
Bma15g00097 213 PANTHER TRANSCRIPTION FACTOR BHLH30 7 212 IPR045847 GO:0003700|GO:0006355
Bma15g00097 213 CDD ACT_UUR-ACR-like 115 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00151 Bma-Chr1:1416665 Bma15g00097 Bma-Chr15:1059794 3.46E-110 dispersed
Bma02g00111 Bma-Chr2:1020575 Bma15g00097 Bma-Chr15:1059794 3.06E-37 dispersed
Bma02g00175 Bma-Chr2:1571563 Bma15g00097 Bma-Chr15:1059794 4.29E-39 dispersed
Bma03g00178 Bma-Chr3:1362116 Bma15g00097 Bma-Chr15:1059794 7.37E-27 dispersed
Bma15g00097 Bma-Chr15:1059794 Bma12g00978 Bma-Chr12:41848692 1.74E-10 dispersed
Bma15g00097 Bma-Chr15:1059794 Bma04g00504 Bma-Chr4:4436374 7.22E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58456 PF00010 HLH 6.70E-13 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00097 - - jre:108993280 288.115