Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00101 ATGGCGTGCTCTCCAATTCCAATCTCGGTTCTTCAATATTCGAACTCAAAAGCCACCAAAATGCCGTCTTTATCGTCTGTATTGAACCCGATTGCCATGGCTAAAGAGCTTCACTTCAATCACGACGGTTCCTCCATTAAAAAGCTACAGGCAGGGGCTGACTTGGTTGCCGAGTTGTTGGGGGTTACTTTGGGTCCGAAGGGAAGGAATGTAGTTTTACAGAACAAGTACGGTCCACCGAAGATTGTCAACGATGGAGAGACTGTCCTAAAGGAGATCGAGTTAGAGGACCCTCTCGAGAATATTGGAGTTAAGTTGATCAGGCAAGCAGGTGCGAAAACAAATGATCTTGCTGGCGATGGCTCTACTACAGCTGTAATTCTAGCTCATGGACTTGTTACCGAGGGTTTGAAGGTTGTTTCTGCTGGCGTTAATCCTGTTCAAGTTTCACGTGGGATTGACAAAACTGCGCAAGCCCTTGTTTCTGAACTCAAATCTATGTCCAAAGAGATTGAGGACCACGAGATAGTAGATGTTGCAGCGGCAAGTGCAGGAAATGATTATGTGATTGGAAATATGATATCAAATGCTCTTTGCCAAGTTGGAAGGGGAGGCGTTGTCAGGATCGAAAAAGGGAAATGCATGGAAACCAGTTTGCAAATCGTAGAAGGAATGCAGTTTGATCGTGGGTATTCGTCTCCATACTTTGTCACCGATCGTCAGAGAAAGATCATAGAATTCCATGATTGCAAGTTTCTTTTGGTTGACAAAAAAATATCGAACCCGAAAGAGATGTTTAAAATATTGGATAATGCAGTCAAAGAGAAGTTTCCTATCGTGATAGTAGCAGAAGGCATTGAACAGGAAGCTCTTGCTCCAATAATTAGAAACAAACTCAAAGGCGTACTTAAGGCGGCAGCTATTAAGGCTCCGTCGTTTGGAGAGCTCAAGAGCCATTATTTAGACGATATCGCCATTTTGACTGGAGGTACTGTAATCAGAGATGAATCTGGGTTGAGTCTAGAAAAGGCTGGCAAGGAAGTACTAGGCACAGCCACTAAGGTTTTGATTACTAAGAATTCTACGCTGATTATTACGGATGGAAGCACTCGAAAAGCAGTTGAAAAGAGAGTTCTTCAAATCCAAAACACAGTTGAGAACACGCAAGAAAAATTTGAAAAGAAGACTCTAGAGGAGCGAATCGCAAGATTATCCGGGGGAATCGCTATTCTTCAGGTAGGAGCACAGACCCAGGTCGAGTTGAAGGATAAACAACTGAGGATTGAAGATGCTTTAAATGCAACCAAGGCGGCAATCGAAGAAGGCGTTGTGGTCGGCGGGGGCTGTACTCTTTTAAGGCTATCCACAAAGATTGATGGTATCAAAAAACTCTTGGACAATGAAGAACAAAGGATTGGTGCTGAGATCTTTAGAAGAGCTTTGAGCTACCCAACAAAGCTAATAGCCAAAAATGCTGGCGCAAATGGAAATGTTGTTATCGAGAAGATTTTGGAAAACAACGACATAAATTATGGATACAATGCCGAGAGAGACCGATTTGAGGATTTGATGAAAGCTGGAATCATTGACCCGACGAAGGTAGTTCGATGTTGCTTGGAGCATTCGGCATCTGTGGCAAAAACTTTTCTAACGTCGGAAGCTGTTGTGGTTGATTTGCCGGAAATAAAACGTATCCCGAGGCTCATGCCAAGTCCTCCAAAATCCAATCGTTTAGGCGCT 1740 43.45 MACSPIPISVLQYSNSKATKMPSLSSVLNPIAMAKELHFNHDGSSIKKLQAGADLVAELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLIRQAGAKTNDLAGDGSTTAVILAHGLVTEGLKVVSAGVNPVQVSRGIDKTAQALVSELKSMSKEIEDHEIVDVAAASAGNDYVIGNMISNALCQVGRGGVVRIEKGKCMETSLQIVEGMQFDRGYSSPYFVTDRQRKIIEFHDCKFLLVDKKISNPKEMFKILDNAVKEKFPIVIVAEGIEQEALAPIIRNKLKGVLKAAAIKAPSFGELKSHYLDDIAILTGGTVIRDESGLSLEKAGKEVLGTATKVLITKNSTLIITDGSTRKAVEKRVLQIQNTVENTQEKFEKKTLEERIARLSGGIAILQVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCTLLRLSTKIDGIKKLLDNEEQRIGAEIFRRALSYPTKLIAKNAGANGNVVIEKILENNDINYGYNAERDRFEDLMKAGIIDPTKVVRCCLEHSASVAKTFLTSEAVVVDLPEIKRIPRLMPSPPKSNRLGA 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1093727 1098196 + Bma030766 Bma15g00101 96223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00101 580 Coils Coil 451 471 - -
Bma15g00101 580 Pfam TCP-1/cpn60 chaperonin family 56 558 IPR002423 GO:0005524
Bma15g00101 580 SUPERFAMILY GroEL equatorial domain-like 44 556 IPR027413 -
Bma15g00101 580 Coils Coil 371 391 - -
Bma15g00101 580 Gene3D GroEL 224 405 IPR027409 -
Bma15g00101 580 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 7 564 - -
Bma15g00101 580 Gene3D - 45 557 IPR027413 -
Bma15g00101 580 SUPERFAMILY GroEL apical domain-like 216 408 IPR027409 -
Bma15g00101 580 ProSitePatterns Chaperonins cpn60 signature. 437 448 IPR018370 GO:0005524|GO:0006457
Bma15g00101 580 Gene3D - 170 442 IPR027410 -
Bma15g00101 580 SUPERFAMILY GroEL-intermediate domain like 173 228 IPR027410 -
Bma15g00101 580 CDD GroEL 35 558 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 7 564 - -
Bma15g00101 580 PRINTS 60kDa chaperonin signature 382 407 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 PRINTS 60kDa chaperonin signature 300 323 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 PRINTS 60kDa chaperonin signature 116 143 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 PRINTS 60kDa chaperonin signature 60 86 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 PRINTS 60kDa chaperonin signature 430 451 IPR001844 GO:0042026|GO:0140662
Bma15g00101 580 Coils Coil 157 177 - -
Bma15g00101 580 TIGRFAM GroEL: chaperonin GroL 34 561 IPR001844 GO:0042026|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00101 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - qsu:112030120 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01362 Bma-Chr7:49241925 Bma15g00101 Bma-Chr15:1093727 1.49E-15 dispersed
Bma09g00965 Bma-Chr9:49190818 Bma15g00101 Bma-Chr15:1093727 1.60E-130 dispersed
Bma14g00861 Bma-Chr14:9674381 Bma15g00101 Bma-Chr15:1093727 5.29E-146 dispersed
Bma15g00101 Bma-Chr15:1093727 Bma06g00054 Bma-Chr6:881019 1.30E-13 dispersed
Bma15g00101 Bma-Chr15:1093727 Bma14g00450 Bma-Chr14:5183304 1.30E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00101 Bma_Chr15 FPKM 1.793844 1.860983 3.970316 3.739165 3.786208 3.852048 3.225489 1.88235 1.957054 1.425379