Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00110 ATGAATGGGAAGAAATTTGCATTTAAATTGGCAAGATGCAAGCAGAAAAGTTTTGGTAAAGTGCCTGCAAGAAATTGTTATGGCTGGAGTTTTAACACTTACACTGGTTCGTCAGAAATTGATTGTTCTGATTGTGAAGTTATTGATAGCTCTTGTGGAAAGCTTCAAGAACAATGGAAAAGAGATTCACAAAAGAGAAGAACACGTGTTCCTATGGAAGCCAAAGGGTCATCTGATGCAAAAAATATACCTGTTGCTGAAATAAGGGAGGTCGTTCCATGTGTTAGTAGTATAATTAATGAACGAGAAAAGCAAAAGGCAAGCGATGAATACAAGGCTGCAGTAGAAGAAGAGTGGGCCTCGAGAAAGCGGGAATTGCAAATTCAGGCAGAGGAGTCACAGAGGTTGCGTAAAAGAAAAAAGGCTGAAACTTTGCGTCTGTTGGACATGCAGAGAAGGCAAAAGGAACGTGTGGAAGAAGTGAGGGAGACTAAAAAGAAAGATGAGGAAAATATGAACTTGAAAGAGAAAATTCGTGCTGAAATGGTGGAGAGTCTTAGTAAGTTGGAAGTCGCATGCATTGACATGGCTTCGTTGCTTCAAGCTTTAGGAATTGAAGTTGGACGTAGCTTAGTTCCAGAATCTGAAGAAGTGCATGCTGCGTACAGAAGAGCTCTGCTTAAATTTCACCCAGACAGGGCATCAAGAATGGACGTTCGCCAACAGGTCGAAGCTGAGGAGAAGTTTAAACTTATATCTCGCATGAAAGAGAAGCTCCAACAGTAG 786 41.22 MNGKKFAFKLARCKQKSFGKVPARNCYGWSFNTYTGSSEIDCSDCEVIDSSCGKLQEQWKRDSQKRRTRVPMEAKGSSDAKNIPVAEIREVVPCVSSIINEREKQKASDEYKAAVEEEWASRKRELQIQAEESQRLRKRKKAETLRLLDMQRRQKERVEEVRETKKKDEENMNLKEKIRAEMVESLSKLEVACIDMASLLQALGIEVGRSLVPESEEVHAAYRRALLKFHPDRASRMDVRQQVEAEEKFKLISRMKEKLQQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1190260 1191689 - Bma013085.1 Bma15g00110 96232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00110 261 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 81 - -
Bma15g00110 261 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 82 259 - -
Bma15g00110 261 Pfam DnaJ domain 203 259 IPR001623 -
Bma15g00110 261 SUPERFAMILY Chaperone J-domain 152 259 IPR036869 -
Bma15g00110 261 CDD DnaJ 203 253 IPR001623 -
Bma15g00110 261 Gene3D DnaJ domain 208 261 IPR036869 -
Bma15g00110 261 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 81 - -
Bma15g00110 261 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 82 259 - -
Bma15g00110 261 Coils Coil 148 171 - -
Bma15g00110 261 ProSiteProfiles dnaJ domain profile. 198 261 IPR001623 -
Bma15g00110 261 Coils Coil 123 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00110 - - - mcha:111004748 238.424
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01717 Bma15g00110 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01717 Bma-Chr14:36386548 Bma15g00110 Bma-Chr15:1190260 3.30E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g4 . . . . . . Bma14g01717 Bma15g00110 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0892 Cone19ag0891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005168 0 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00110 Bma_Chr15 FPKM 29.339958 27.3438 62.154186 60.662952 43.110432 43.380287 45.000282 23.731222 23.06469 24.765961