Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00128 ATGAAGAAATCTGGCATACAAATTACAAGACATGGTTGTTTATACGAGACTGCACCAGCTTATGTGACCGATCAGCCTCAGTTTCTCAATTCTGCAGTTAGAGCTGTTACTCGACTCGGTCCACATGAATTAATTGGAGCACTCAAGAAAATAGAGCGAGACTTGGGTCGTACTGAGGGGATAAGGTATGGTCCGAGACCAATTGACTTGGATATCCTGTTTTATGGAAAATTTAAGATACATTCCGATATTCTTACTGTCCCGCACGAAAGAATTTGGGAAAGGCCATTTGTGATGGCTCCTCTGGTTGATTTGCTTGGTTTAGCTGCAGATAGTGATGCAGCTGCTTGCTGGCATTCTTTAGCTCCTGATGTTGGTGGACTTTTTGAATCATGGGAAAAACTAGGTGGTGAATCCTTAATTGGAAAAGAAGGTCTCAAAAGGGTTTTGCCTATAGGAAACGATCTATGGGATTGGTCTAGGAAAACTTCTGTCATGGGTATCCTTAATGTAACCCCGGATAGTTTCAGTGATGGTGGCAAGTTTCAGTCTGTTGAGGTTGCAATTTCTCGGGTTCGCTTAATAATTTCTGAAGGGGCAGATATGATCGATATTGGAGCACAATCTACGCGGCCTATGGCCCCTAGAATTTCTGCAGAAGAAGAACTAGATAGATTAATGCCTATCTTAGAAGCTGTTTTAGGAATCCCTGAAATGAAAGGGAAGCTCCAAAATTTGGAAATCCTCGTGAATTTAGCCAAAATTCGAGGCGCAATGGCCACAAAAAGTTTGGGTTTGTCTCGTGCTCCATTGTTGATTGGACCTTCGAGAAAGCGATTTCTCGGCGAAGTCTGCTCGATTTCGACTGCAACTGAGAGAGATTACGCTACAGTTGCTTCGACTACGGCTGGAGTATTAGGCGGTGCAAATATTGTAAGAGTTCATAATGTAAGAGCAAATGCAGATGCTGTCAAACTGTGTGATGCAATGTTGAAGCTGCAAAAGAGGGAATTTAGATGA 1020 42.65 MKKSGIQITRHGCLYETAPAYVTDQPQFLNSAVRAVTRLGPHELIGALKKIERDLGRTEGIRYGPRPIDLDILFYGKFKIHSDILTVPHERIWERPFVMAPLVDLLGLAADSDAAACWHSLAPDVGGLFESWEKLGGESLIGKEGLKRVLPIGNDLWDWSRKTSVMGILNVTPDSFSDGGKFQSVEVAISRVRLIISEGADMIDIGAQSTRPMAPRISAEEELDRLMPILEAVLGIPEMKGKLQNLEILVNLAKIRGAMATKSLGLSRAPLLIGPSRKRFLGEVCSISTATERDYATVASTTAGVLGGANIVRVHNVRANADAVKLCDAMLKLQKREFR 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1399255 1400592 - Bma013106.2 Bma15g00128 96250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00128 339 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 62 73 IPR000550 GO:0003848|GO:0009396
Bma15g00128 339 ProSiteProfiles Pterin-binding domain profile. 163 339 IPR000489 GO:0042558
Bma15g00128 339 SUPERFAMILY Dihydropteroate synthetase-like 152 332 IPR011005 GO:0044237
Bma15g00128 339 ProSitePatterns Dihydropteroate synthase signature 2. 199 212 IPR000489 GO:0042558
Bma15g00128 339 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 5 106 IPR035907 -
Bma15g00128 339 ProSitePatterns Dihydropteroate synthase signature 1. 165 180 IPR000489 GO:0042558
Bma15g00128 339 Gene3D - 237 335 IPR011005 GO:0044237
Bma15g00128 339 CDD HPPK 4 105 IPR000550 GO:0003848|GO:0009396
Bma15g00128 339 TIGRFAM folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 105 IPR000550 GO:0003848|GO:0009396
Bma15g00128 339 PANTHER FOLIC ACID SYNTHESIS PROTEIN FOL1 1 235 - -
Bma15g00128 339 Gene3D - 1 121 IPR035907 -
Bma15g00128 339 Pfam Pterin binding enzyme 240 315 IPR000489 GO:0042558
Bma15g00128 339 Pfam Pterin binding enzyme 166 235 IPR000489 GO:0042558
Bma15g00128 339 PANTHER FOLATE SYNTHESIS PROTEINS 240 331 IPR045031 GO:0004156|GO:0009396
Bma15g00128 339 PANTHER FOLATE SYNTHESIS PROTEINS 1 235 IPR045031 GO:0004156|GO:0009396
Bma15g00128 339 Gene3D - 158 236 IPR011005 GO:0044237
Bma15g00128 339 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 8 105 IPR000550 GO:0003848|GO:0009396
Bma15g00128 339 PANTHER FOLIC ACID SYNTHESIS PROTEIN FOL1 240 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00128 K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] - pop:7498217 405.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g20 . . . . . Bpe10g00904 . Bma15g00128 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0898 Cone19ag0895 . . . . . . Blo06g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007691 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00128 Bma_Chr15 FPKM 1.584599 1.590535 6.475608 6.605695 36.503731 31.89139 38.516445 4.528311 4.513282 4.898022