Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00130 ATGTGTGGAATCGCCTTGGTTGTCTCCGGAATACCTTTTGATTTATCATCTCTGTTCCTTGATTCCATTTATCCACCCTTAAATTCCGACCACTTCACTTGCACCAGCCTGGAGTTTTCCATTGATGATCTCAAAGCCGCTCTGAGGAGGAGGGGCCCCGACAGCTTGGGCAGCGCAAAAGTTAGGATTTTCCTTTCGAAAACTTCAAGTTCGAGCGAGGAAACGGAAGTCAAATCCGTAATTGAAAGGGAAGAGGATGTAAGAGCTGCAGCGTACTGTAAGGAAGAGTATGGGATGAATGACAATGGCTCTTGCATTGCCCCTTCAGGGCGTGGTTTACTCACTCCTGTTGCAGAATTGTATCTAATAGGGGCTACGTTGCAGTTAAGAGGAATAAATCCTATCACCCAGCCTCTATTAGATGCAGCGGAAAATATCCTTGTTTTCAACGGTGAAATATTTGGAGGAATTTATGTGGCTCGGGATAGTAATGATGCAGAAACTCTTCTGCAATCTCTTGGTAAATGCTGCTCTTGTGTTTCTAGTTTTCATGAGAGAAATTGCTACGTTGATGGAAAGAAGCAAAATACCGTTTCAGAAGTTTTTTCCATGATTAAAGGGCCATGGTCAGTCATATATTGGCAGGATAGTACGAAGACTCTTTGGTTTGGCCGAGATGCATTTGGTAGGCGAAGCCTCCTTGTTCACTGGCCAACTCTTGAGGACTCCCGGTTTCTTTTATCTTCTGTATCTTCAGCTCTTTCAGTTGTTCAAGATACTGGTTTTGAAGCAGAAACCGGGAGTAGGGAATTCAGCTTTTGGGAAGAGCTTCCATGTGGTATTTACAGCTTGTCATTTGAGACTCAAAATTCAATTTGTTGTCTGATTGGTGAAATTAGAAAACATGAATTGACAAATGACGAGCTGAAAGCATTGATTAAGTGGGAGAGAATCAATGTTGTACCTTCGCCTGAAGTTATGTGTCTTGCTGAGAATGAAATTTCGTTGGGGCCTTGCAACATTAATTCAGTTTCTTCAGAAAAGCTGCTATCTGGAGCAGGTTCGTGTAACAGTGAAACAACCTTCTGTTTCCGGTGTGCAGAAATGGTGCTTGCTGCTTTAAAGGAATCTGTGATGCGACGATCTTCACTGCATACTGTTTTCCAGGGAGTTTCATCTGATTCTATAATGGGGAATGTTGGGCCAGTGGCAGTTCTTTTTTCTGGTGGTAATCAAGCTTTATCTCGAATCTTACATTTTCTGATTATGGAAAATCTTAAATTGTGGAAGCTAGTGGAGATTGATGCTGATTTGGAAAATTTAATGATTGAGACAAAGCATGTCATGTCGCTAATCAATCCTTCCAACACTTATATGGATATGAACATTGGAATAGCTTTATGGCTAGCTTCTGGTGGCGATGGTTGGATTTATGATGGAAGTGGTTATGACGACTATAATAGTCGACTTAAGTATAAATCGAGGGCCAGGATTCTTCTTGTTGGTTCTGGTGCTGATGAGCAATGTGCTGGCTACGGCCGACATAGAACAAATTACAGACACGGGAGCTGGGTTGGATTACATGAGGAAATGAAATTGGACATGCAGAGAATTTGGAAGAGAAACCTGGGGAGAGATGATAGATGCATTGCCGACAATGGAAAGGAGGCCAGGTTTCCTTTCTTGGATGAAGACGTTATTAGAACCTTGCTAGATATTCCCTTGTGGGAGATTGCTGAGCTTGATAAACCTAGTGGAACAGGTGATAAGAAGATTCTCAGAGAGGTTGCCAAAATGCTTGGTTTACATGAAGCAGCAGTTTTACCAAAAAGAGCGATACAGTTTGGTTCAAGAATTGCTCGGGAATCAAATCGAAAGAATTTTGGAAGTAACCGAGCGGCAAATCAAGCATCAGCAGGAAGTGTGAAAATTCACGAGCAGGCCAAACGGACACGATGA 1959 42.37 MCGIALVVSGIPFDLSSLFLDSIYPPLNSDHFTCTSLEFSIDDLKAALRRRGPDSLGSAKVRIFLSKTSSSSEETEVKSVIEREEDVRAAAYCKEEYGMNDNGSCIAPSGRGLLTPVAELYLIGATLQLRGINPITQPLLDAAENILVFNGEIFGGIYVARDSNDAETLLQSLGKCCSCVSSFHERNCYVDGKKQNTVSEVFSMIKGPWSVIYWQDSTKTLWFGRDAFGRRSLLVHWPTLEDSRFLLSSVSSALSVVQDTGFEAETGSREFSFWEELPCGIYSLSFETQNSICCLIGEIRKHELTNDELKALIKWERINVVPSPEVMCLAENEISLGPCNINSVSSEKLLSGAGSCNSETTFCFRCAEMVLAALKESVMRRSSLHTVFQGVSSDSIMGNVGPVAVLFSGGNQALSRILHFLIMENLKLWKLVEIDADLENLMIETKHVMSLINPSNTYMDMNIGIALWLASGGDGWIYDGSGYDDYNSRLKYKSRARILLVGSGADEQCAGYGRHRTNYRHGSWVGLHEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWEIAELDKPSGTGDKKILREVAKMLGLHEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKIHEQAKRTR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1411187 1416971 - Bma013108.3 Bma15g00130 96252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00130 652 MobiDBLite consensus disorder prediction 624 642 - -
Bma15g00130 652 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 44 268 IPR029055 -
Bma15g00130 652 Pfam Glutamine amidotransferase domain 136 254 IPR017932 -
Bma15g00130 652 CDD Asn_Synthase_B_C 401 616 IPR001962 GO:0004066|GO:0006529
Bma15g00130 652 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 33 270 IPR029055 -
Bma15g00130 652 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 425 636 - -
Bma15g00130 652 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 421 - -
Bma15g00130 652 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 492 636 - -
Bma15g00130 652 Pfam Asparagine synthase 522 605 IPR001962 GO:0004066|GO:0006529
Bma15g00130 652 Gene3D HUPs 420 651 IPR014729 -
Bma15g00130 652 MobiDBLite consensus disorder prediction 624 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00130 - - - csv:101211806 742.265
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00130 Bma_Chr15 FPKM 9.572436 11.411795 12.803762 13.412046 14.401187 15.522567 15.85958 13.036049 13.829157 15.351535