Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00137 ATGGATATGGAGATCGATCTCTCTGCGCCAAATCCCCAAATCAAAGCTGATGAGCTTTTCAGAGCGGCGGAGGCCGGAGATTGTTCTATTTTCGAAGCTCTTTCTCGGGAGCAGTTTCTCAGTGCTTTTTCTCTGAGAAATGAGGATTGTCGGTCTCTCCTCCATGTTGCTGCCTCTTCAGACCGTACTGAGGTGGTGAAGTTGCTGTCTGCATCTGAGCAATCAGCTAGCATGGTAAATAGTGCGGATGAAGAAGGGTGGGCACCGCTTCATTCTGCGAGTAGCATTGGAAATGCAGAAATAGTGGACATTTTATTAAGCATCGGTGCTGATGTACATTTGAAAAACGATGGCGGCCGAGCTGCTCTTCACTATGCAGCCAGCAAAGGATGGTTAAAGATTGCTCAAACTCTGATTTCACATGGGGCAAAGCTCAATATGAAGGACAAGGTTGGTGGTACTCCACTGCATCGGGCTGCCAGCACAGGAAAGTCAGAGTTGTGCGAACTGTTGATTGAGGAAGGAGCAGAGCTTGATGCTGTTGATAAAGCTGGTCAAACTCCTCTTATGCATGCAGTAATTTGTAACAACAGGGAGGTAGCTCTTCTTCTGGTTAGGCATGGAGCCGACCTGGATGTGGAAGACAAGGAAGGATATACAGTGCTGGGTATGTCCACTGATCTCAGACCTGCGCTAATTGATGCTGCAAAGGCAATGTTTGAAGGATAA 729 47.46 MDMEIDLSAPNPQIKADELFRAAEAGDCSIFEALSREQFLSAFSLRNEDCRSLLHVAASSDRTEVVKLLSASEQSASMVNSADEEGWAPLHSASSIGNAEIVDILLSIGADVHLKNDGGRAALHYAASKGWLKIAQTLISHGAKLNMKDKVGGTPLHRAASTGKSELCELLIEEGAELDAVDKAGQTPLMHAVICNNREVALLLVRHGADLDVEDKEGYTVLGMSTDLRPALIDAAKAMFEG 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1466216 1467893 + Bma013116.1 Bma15g00137 96259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00137 242 Pfam Ankyrin repeat 119 150 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Bma15g00137 242 SMART ANK_2a 85 114 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 184 213 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 151 180 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 49 78 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 118 147 IPR002110 GO:0005515
Bma15g00137 242 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Bma15g00137 242 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Bma15g00137 242 Pfam Ankyrin repeats (3 copies) 19 116 IPR002110 GO:0005515
Bma15g00137 242 Pfam Ankyrin repeats (3 copies) 152 215 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 45 116 - -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 226 - -
Bma15g00137 242 SUPERFAMILY Ankyrin repeat 19 224 IPR036770 -
Bma15g00137 242 Gene3D - 11 152 IPR036770 -
Bma15g00137 242 Gene3D - 153 236 IPR036770 -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 45 116 - -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 226 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00137 K06694 PSMD10; 26S proteasome non-ATPase regulatory subunit 10 - qsu:112012285 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00893 Bma-Chr5:46723429 Bma15g00137 Bma-Chr15:1466216 1.52E-10 dispersed
Bma07g00490 Bma-Chr7:5973301 Bma15g00137 Bma-Chr15:1466216 2.02E-06 dispersed
Bma07g00492 Bma-Chr7:6065537 Bma15g00137 Bma-Chr15:1466216 2.16E-07 dispersed
Bma13g00599 Bma-Chr13:13797660 Bma15g00137 Bma-Chr15:1466216 2.92E-07 dispersed
Bma14g01512 Bma-Chr14:30566865 Bma15g00137 Bma-Chr15:1466216 5.29E-06 dispersed
Bma15g00137 Bma-Chr15:1466216 Bma15g00558 Bma-Chr15:6427103 2.08E-06 dispersed
Bma15g00137 Bma-Chr15:1466216 Bma13g00036 Bma-Chr13:438643 4.89E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g73 . . . . . Bpe10g00893 . Bma15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0546 Cone9ag0556 . . . . Blo06g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00137 Bma_Chr15 FPKM 59.680031 62.237633 59.381145 61.244118 54.329937 56.882137 55.36692 67.308121 59.083633 60.255566