Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00138 ATGCTTAATCCAGACTTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTTTGATGTTATTGGATTATATAAATGTATGAATATTCATTGTAGAGAAAGCGATAACATTGTTTTTTCGATCGTGTTGAAAGCATGTAGCGAATTACGGGATCATAATACAGGGGGGAAGGTACACTGCCAAATTGTGAAGGTTGGGTGTCCAGATAGTTTTGTATTGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGACAGCTCGGAGAAAGTGTTTGATGGGATTCTCGAGAGAAACATTGTTTGTTGGACGTCGATGGTTGTGGGATATGTGCAGAACGACTGTCCGAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGAAGGAGACCAATTTACATTAGGCAGTCTAGTCTCTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAATGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTTGTAGATTTGTATGTTAAGTGTGGATACGTTAGCGATGCTCGTTTGTTATTTGATGAGCTTTCAAGCGTTGATCTTGTTTCATGGACAGCTATGATCGTTGGGTATGCACAAAATGGCTGTCCTCACGAGGCCTTGAAATTGTTCGTCGATGCAAAATGGTCTCATCTTTTGCCTAATTCTATAACAACAGCTAGTGTACTTTCGTCATGTGCACAGCTCCGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTGGGGTTAGAAGAATCTGTCGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCGTTTTATCTTTGAGACGATTTCAGACAAGGATTTGATTACTTGGAATTCAATTATATCCGGGTATTTGGTAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCATACAATGATCTCAGATTCGTTCGCTCCCGATGCAGTTAGTTTGGTGAGCGTTCTTTCAGCCTCAGCTTCCCTCAACGCTCTTCAGCTCGGGTCATCTATTCACGCTTACTCTATTAAGGAGGGTCTTTTGTCATCTAATCTCTATTTAGGCACAGCTCTACTGAACTTTTATGCCAAATGTGGCGATACTAAATCCGCACGAATGGTGTTTGATGGCATGGTGGAGAAGAACATCATCACATGGAGTGCTATGATCACTGGCTATGGTTTGCAGGGGGACAGAAATGGATCGCTCAAACTTTACAGTGAGCTTATGAAGGAGGAACTAAAGCCGAACGAAGTGATCTTCACAGCAATTTTATCGGCTTGTAGCCATACCGGAATGGTTGCAGAAGGATGGAAGTACTTTAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCGAAGCATTATGCTTGTATGGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCCTGGATTTTATCGAGAAAATGCCGGTTCAACCGGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGTGGATTATATGCAAGATTAGATCTTGCGGAAGTGGCAATCAAAAGAATGCTAAAAATGCATCCTGAAGAAAGTTGCTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAATCAGGTTAATGAAGTTAGAGAACTAATGAAGAGCAGAGGATTGAGCAAAAGCCCTGGTCTAAGCCTTGTAGAATCTGATATTAATGCTCATATTTTACAAATTTGA 1794 40.41 MLNPDFYSWKVMIRWYFLNDLYFDVIGLYKCMNIHCRESDNIVFSIVLKACSELRDHNTGGKVHCQIVKVGCPDSFVLTSLVDMYSKCGQIDSSEKVFDGILERNIVCWTSMVVGYVQNDCPKEGLILFNRMREGNVEGDQFTLGSLVSACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDLYVKCGYVSDARLLFDELSSVDLVSWTAMIVGYAQNGCPHEALKLFVDAKWSHLLPNSITTASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDARFIFETISDKDLITWNSIISGYLVNGFANESLQLFHTMISDSFAPDAVSLVSVLSASASLNALQLGSSIHAYSIKEGLLSSNLYLGTALLNFYAKCGDTKSARMVFDGMVEKNIITWSAMITGYGLQGDRNGSLKLYSELMKEELKPNEVIFTAILSACSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACMVDLLARAGRLEEALDFIEKMPVQPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWNQVNEVRELMKSRGLSKSPGLSLVESDINAHILQI 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1469833 1471626 - Bma013117.3 Bma15g00138 96260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bma15g00138 597 Pfam Pentatricopeptide repeat domain 406 454 IPR002885 -
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 162 260 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 274 359 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 383 591 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 2 161 IPR011990 GO:0005515
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 208 232 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 483 506 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 382 409 IPR002885 -
Bma15g00138 597 PANTHER OS07G0578800 PROTEIN-RELATED 5 591 IPR045215 GO:0003723|GO:0009451
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bma15g00138 597 SUPERFAMILY HCP-like 369 553 - -
Bma15g00138 597 Pfam PPR repeat 483 506 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 178 202 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 208 231 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 308 336 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 78 106 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 107 136 IPR002885 -
Bma15g00138 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 5 591 - -
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Bma15g00138 597 Pfam E motif 525 587 IPR046848 -
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00138 Bma-Chr15:1469833 Bma08g00894 Bma-Chr8:47838272 1.02E-51 dispersed
Bma15g00138 Bma-Chr15:1469833 Bma02g01043 Bma-Chr2:51951043 1.68E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00138 - - qsu:112012181 874.774