Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00138 ATGCTTAATCCAGACTTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTTTGATGTTATTGGATTATATAAATGTATGAATATTCATTGTAGAGAAAGCGATAACATTGTTTTTTCGATCGTGTTGAAAGCATGTAGCGAATTACGGGATCATAATACAGGGGGGAAGGTACACTGCCAAATTGTGAAGGTTGGGTGTCCAGATAGTTTTGTATTGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGACAGCTCGGAGAAAGTGTTTGATGGGATTCTCGAGAGAAACATTGTTTGTTGGACGTCGATGGTTGTGGGATATGTGCAGAACGACTGTCCGAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGAAGGAGACCAATTTACATTAGGCAGTCTAGTCTCTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAATGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTTGTAGATTTGTATGTTAAGTGTGGATACGTTAGCGATGCTCGTTTGTTATTTGATGAGCTTTCAAGCGTTGATCTTGTTTCATGGACAGCTATGATCGTTGGGTATGCACAAAATGGCTGTCCTCACGAGGCCTTGAAATTGTTCGTCGATGCAAAATGGTCTCATCTTTTGCCTAATTCTATAACAACAGCTAGTGTACTTTCGTCATGTGCACAGCTCCGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTGGGGTTAGAAGAATCTGTCGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCGTTTTATCTTTGAGACGATTTCAGACAAGGATTTGATTACTTGGAATTCAATTATATCCGGGTATTTGGTAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCATACAATGATCTCAGATTCGTTCGCTCCCGATGCAGTTAGTTTGGTGAGCGTTCTTTCAGCCTCAGCTTCCCTCAACGCTCTTCAGCTCGGGTCATCTATTCACGCTTACTCTATTAAGGAGGGTCTTTTGTCATCTAATCTCTATTTAGGCACAGCTCTACTGAACTTTTATGCCAAATGTGGCGATACTAAATCCGCACGAATGGTGTTTGATGGCATGGTGGAGAAGAACATCATCACATGGAGTGCTATGATCACTGGCTATGGTTTGCAGGGGGACAGAAATGGATCGCTCAAACTTTACAGTGAGCTTATGAAGGAGGAACTAAAGCCGAACGAAGTGATCTTCACAGCAATTTTATCGGCTTGTAGCCATACCGGAATGGTTGCAGAAGGATGGAAGTACTTTAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCGAAGCATTATGCTTGTATGGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCCTGGATTTTATCGAGAAAATGCCGGTTCAACCGGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGTGGATTATATGCAAGATTAGATCTTGCGGAAGTGGCAATCAAAAGAATGCTAAAAATGCATCCTGAAGAAAGTTGCTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAATCAGGTTAATGAAGTTAGAGAACTAATGAAGAGCAGAGGATTGAGCAAAAGCCCTGGTCTAAGCCTTGTAGAATCTGATATTAATGCTCATATTTTACAAATTTGA 1794 40.41 MLNPDFYSWKVMIRWYFLNDLYFDVIGLYKCMNIHCRESDNIVFSIVLKACSELRDHNTGGKVHCQIVKVGCPDSFVLTSLVDMYSKCGQIDSSEKVFDGILERNIVCWTSMVVGYVQNDCPKEGLILFNRMREGNVEGDQFTLGSLVSACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDLYVKCGYVSDARLLFDELSSVDLVSWTAMIVGYAQNGCPHEALKLFVDAKWSHLLPNSITTASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDARFIFETISDKDLITWNSIISGYLVNGFANESLQLFHTMISDSFAPDAVSLVSVLSASASLNALQLGSSIHAYSIKEGLLSSNLYLGTALLNFYAKCGDTKSARMVFDGMVEKNIITWSAMITGYGLQGDRNGSLKLYSELMKEELKPNEVIFTAILSACSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACMVDLLARAGRLEEALDFIEKMPVQPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWNQVNEVRELMKSRGLSKSPGLSLVESDINAHILQI 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1469833 1471626 - Bma013117.3 Bma15g00138 96260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bma15g00138 597 Pfam Pentatricopeptide repeat domain 406 454 IPR002885 -
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 162 260 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 274 359 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 383 591 IPR011990 GO:0005515
Bma15g00138 597 Gene3D Tetratricopeptide repeat domain 2 161 IPR011990 GO:0005515
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 208 232 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 483 506 IPR002885 -
Bma15g00138 597 TIGRFAM PPR: pentatricopeptide repeat domain 382 409 IPR002885 -
Bma15g00138 597 PANTHER OS07G0578800 PROTEIN-RELATED 5 591 IPR045215 GO:0003723|GO:0009451
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bma15g00138 597 SUPERFAMILY HCP-like 369 553 - -
Bma15g00138 597 Pfam PPR repeat 483 506 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 178 202 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 208 231 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 308 336 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 78 106 IPR002885 -
Bma15g00138 597 Pfam PPR repeat 107 136 IPR002885 -
Bma15g00138 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 5 591 - -
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Bma15g00138 597 Pfam E motif 525 587 IPR046848 -
Bma15g00138 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00138 - - - qsu:112012181 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00138 Bma-Chr15:1469833 Bma08g00894 Bma-Chr8:47838272 1.02E-51 dispersed
Bma15g00138 Bma-Chr15:1469833 Bma02g01043 Bma-Chr2:51951043 1.68E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g79 . . . . . Bpe10g00892 . Bma15g00138 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0919 . . . . . . Blo06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010395 1 1 1 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00138 Bma_Chr15 FPKM 2.060403 3.724266 8.202346 6.322546 1.12828 0.794554 1.041864 5.622826 5.098925 4.134828