Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00140 ATGGCGGTATCTGGAAATTTCAGGGTTTCTACTATTACTGGTTCATCCCATCCACACCCTCTTCGAAGCTGTATTTCCACGAACAAGGTAGAATTTTCAAGTTTCCTCCGCAGCAAAACTTGTGCTAAGGAAATCAGATTTAAATGGCGGAATATGACTCTCGATAGCCGTTTTACTCGTGATATTCACAAAAGACGACGCGATAAGCTATCTCCAAATTCCATAATGGAAGAAACTGAGAAATTCCTTCTTAGTGTCGTAAATATGAGCTTTCTCGACCGGCTGAGCGTGGCTTGGAGGATAGTCTTCCCCTCCTCATCATCCAAAAAGAGCTCTAATGCAATGGTTGCCAAAAAACGGCTGAAAATGATTCTCTTCTCCGACAGATGCGCAGTTACCGACGAAGGGAAAAGGAAGATCGTCAACAGCATTGTCCGGGTTTTATCGGAGTTTGTCGAAATAGAATCACAAGACCAAGTACAGTTGAATGTCTCTACAGATTCTGATATCGGAACTATTTATTCAGTGATTGTGCCGGTGAGGAGAGTGAAGCCGGCATATCACAAAGATGATGGAGAAAGATCTGTCTGCAATAATCCCCTGTTCTCCAGTCTCCTGTCTCCTGCGCCAACTTTCTCTTTCTATATCTATAAAAGGATTCTTCTCGCCACTCTCTCTCCCCGCCTCCGCTTCTCGTTCTCGCCACTCTCTCCTCCCCTCTCTAGCTCTCTTCTCATTGACCCTAGCCAGGACGCCGGAGCTTCAAAAACCTACCCGCAGCAAGCCGGAACTATTCGCAAGAATGGTTATATAGTCATCAAGGGCAGACCCTGCAAGGTTGTGGAGGTTTCCACTTCAAAAACTGGAAAGCATGGTCATGCTAAATGTCATTTTGTTGCCATCGACATCTTCACTGCCAAAAAGCTGGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTGCCCCATGTTACCAGAACTGACTATCAGTTGATTGATATCTCTGAGGATGGATTTGTTAGTCTGCTGACCGACAATGGTAGTACCAAGGATGACCTAAGGCTTCCAACTGATGACAGCCTTCTGACTCAGATAAAAGATGGATTCTCTGAGGGTAAGGATCTGGTTGTCTCTGTTATGTCTGCAATGGGAGAGGAGCAGATTTGTGCTCTCAAAGACATCGGCCCCAAGTAA 1194 45.14 MAVSGNFRVSTITGSSHPHPLRSCISTNKVEFSSFLRSKTCAKEIRFKWRNMTLDSRFTRDIHKRRRDKLSPNSIMEETEKFLLSVVNMSFLDRLSVAWRIVFPSSSSKKSSNAMVAKKRLKMILFSDRCAVTDEGKRKIVNSIVRVLSEFVEIESQDQVQLNVSTDSDIGTIYSVIVPVRRVKPAYHKDDGERSVCNNPLFSSLLSPAPTFSFYIYKRILLATLSPRLRFSFSPLSPPLSSSLLIDPSQDAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDSLLTQIKDGFSEGKDLVVSVMSAMGEEQICALKDIGPK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1486229 1490111 + Bma013119.1 Bma15g00140 96262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00140 397 PANTHER BNAA07G09420D PROTEIN 249 394 - -
Bma15g00140 397 Gene3D - 247 323 IPR014722 -
Bma15g00140 397 TIGRFAM eIF_5A: translation elongation factor IF5A 255 391 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma15g00140 397 Pfam Septum formation topological specificity factor MinE 114 180 IPR005527 GO:0032955|GO:0051301
Bma15g00140 397 Gene3D Cell division topological specificity factor MinE 100 179 IPR036707 GO:0032955|GO:0051301
Bma15g00140 397 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 249 394 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma15g00140 397 SUPERFAMILY Nucleic acid-binding proteins 324 394 IPR012340 -
Bma15g00140 397 SMART eIF_5a_2 323 392 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma15g00140 397 Gene3D - 324 396 IPR012340 -
Bma15g00140 397 SUPERFAMILY Translation proteins SH3-like domain 253 331 IPR008991 -
Bma15g00140 397 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 288 295 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma15g00140 397 CDD S1_eIF5A 324 394 - -
Bma15g00140 397 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 323 392 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01659 Bma-Chr14:35180006 Bma15g00140 Bma-Chr15:1486229 5.61E-105 wgd
Bma15g00140 Bma-Chr15:1486229 Bma03g00840 Bma-Chr3:8035180 3.42E-91 wgd
Bma15g00140 Bma-Chr15:1486229 Bma06g00716 Bma-Chr6:37877345 3.75E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00140 K03263 K02180 sspl:121756232 292.352