Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00141 CTATGGCCGGGGATGGCAGGTCAGCCATCGTCTTCGAAACCCGTGACTGCGCCGACCTCTAAACCGACCATTTCTCTCCCACCACGAGCTTCTGTGGAGTCGTTTTTGAAAGGCGGGAGCGGGTCGAGCTTCGATTGTAGCCCCGGGCCTATGACTCTCGTCTCTAGTTTCCTCTCTGACAACGACGACTACAAATCCTTTGGACTGTTTGGATTGACGCACCGACAGGCCTTTGGCCAGGCTACAGTTCACGCTGGCCGATCTAATTCCTTGCAACTCCAACCAGATCATCACTCGTCTTCCTCGTCGAAACCTGGCGTGTCCTCGATTCAGCAGATGGCGCTCTTAGTACCAAACTCTGATGTTTCAGTGAAGGAATTTTCGGGTATTACTGAACCAGACCAGATTTGTCAACCCTCTTCGTATGCTTCTCATAAACCAGGTGGTGATGGATACAACTGGAGAAAGTATGGACAGAAACAAGTAAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAATGCACGAACCCGAGCTGTCCTGTTAAGAAAAAGGTCGAAAGGTCGACAAACGGCACCGTGATTGAAATCATCTACAAGGGCCAGCACAATCACCAACCTCCTCTACCCAACAAGCGACCGAAATATCCAGGCGGAAATTCAAATATTCACGCCAATTTTGAGCTACTTCCGAAAGTCCAAAACGAAAATTCAGAACTATCTGGTTCAAGCGACGGTGAGGAAATGGTCGAAACTGAAAATGGAGTGGACGAAAAAGACGAAGACGAACGAGATCCAAAGCGACTGAGCATGGAGATCGGGGGTTCGTCGTCGCAAAGGGAACCCAAAATCGTTGTGCAGACGACGAGTGAGATCGATGTTTTGGAAGATGGGTATAGGTGGCGGAAATATGGGCAGAAAATTGTTAAAGGCAATCTTTACCCAAGGAGCTATTACAAATGCACAACTCCTGGATGCAGTGTTCGGAAGCATATAGAGCGCGCCGCCTCCGACCGTAAAGCTGTCATTACGACGTACGAAGGAAAACACAACCACGACGTTCCGATGGCTAAGACTTACAATGATTTTACGAGCAAAGCTCAACCGATAGGGCGTTTACGTTTAAAAGAAGAACAGACTAAATAG 1143 48.38 LWPGMAGQPSSSKPVTAPTSKPTISLPPRASVESFLKGGSGSSFDCSPGPMTLVSSFLSDNDDYKSFGLFGLTHRQAFGQATVHAGRSNSLQLQPDHHSSSSSKPGVSSIQQMALLVPNSDVSVKEFSGITEPDQICQPSSYASHKPGGDGYNWRKYGQKQVKGSEFPRSYYKCTNPSCPVKKKVERSTNGTVIEIIYKGQHNHQPPLPNKRPKYPGGNSNIHANFELLPKVQNENSELSGSSDGEEMVETENGVDEKDEDERDPKRLSMEIGGSSSQREPKIVVQTTSEIDVLEDGYRWRKYGQKIVKGNLYPRSYYKCTTPGCSVRKHIERAASDRKAVITTYEGKHNHDVPMAKTYNDFTSKAQPIGRLRLKEEQTK 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1491371 1493171 + Bma013120.1 Bma15g00141 96263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00141 380 MobiDBLite consensus disorder prediction 235 282 - -
Bma15g00141 380 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 SUPERFAMILY WRKY DNA-binding domain 144 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 MobiDBLite consensus disorder prediction 199 223 - -
Bma15g00141 380 SMART WRKY_cls 294 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 SMART WRKY_cls 148 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 MobiDBLite consensus disorder prediction 9 27 - -
Bma15g00141 380 Pfam WRKY DNA -binding domain 150 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 Pfam WRKY DNA -binding domain 295 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 365 IPR044810 GO:0003700
Bma15g00141 380 ProSiteProfiles WRKY domain profile. 143 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 Gene3D WRKY domain 136 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 Gene3D WRKY domain 279 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma15g00141 380 MobiDBLite consensus disorder prediction 1 32 - -
Bma15g00141 380 PANTHER OS12G0507300 PROTEIN 65 365 - -
Bma15g00141 380 ProSiteProfiles WRKY domain profile. 289 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00141 Bma-Chr15:1491371 Bma10g00588 Bma-Chr10:7220605 4.54E-78 dispersed
Bma15g00141 Bma-Chr15:1491371 Bma13g00167 Bma-Chr13:1952044 1.09E-90 transposed
Bma15g00141 Bma-Chr15:1491371 Bma14g01445 Bma-Chr14:27854253 3.18E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58459 PF03106 WRKY 4.20E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00141 - - csv:101214453 379.407