Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00144 ATGGAAGAGTCGAATACTAGCAAGAAATGCAACCCGAGAACAGGGAGTTTCAGAGGGAGGAGTACGAGTAATCTTCATGAATATCAGAATCAGAATCGTCAGTTTCTTCAATACTCGAGTCATAATGGGTTTGGTTATCAGAATCAGTATATGAGATACTACCCATTTTTTCTTCCTCTTCCTCCTCCAATCCCTCTGCATCTTGCTTTACCCCCACCTCCTCCTCAGAATCAAAGCTTTTGGATAAATACCCATTTGCAGAAACCTTATTGTAAGCTCGATGCTCCTCCTTTAATGGCGGCTCCTGATACCCATCTTCCCATAGTCAAAATTTCCGCAGGTAAACTCTTGTTCTACTTTCCTTTTCTTCTGATTAAGGGAACTGGGATTAAACGAGAGATGGGGAGACTTGGTGAAAGGAAAATGGAGGTGATAATGGCGGCAAAGAGACCGGATTCAGGTGGCGTAGAAGGGTCTGTAATTTCTCTCCTGGCAAACCATTTTCTAGTTCGGTTCGATCCTTCTCAGAAAATATTCCATTACAATGTCGAGATCTCTCCAAATCCCTCAAAGGAAATCTGCAGACTGATCAAACAGCAGTTGGTAGAAGAAAACTCTGATTTGCTTTCTGGAGCTTCTCCTGCTTACGATGGCCGTAAAAATCTTTACAGTCCGGTTGAATTCAATAAAGACAGACTGGATTTCTGTGTGAATCTCCCGATTCCTACTACCAAAATGGCGATTTCAAAAGAAGAATCAAATAATACCCAATCGAAAAACCAGAAACAGCTGAAAATGTTCAGAATAAACATCAGGCTTGTATCAAAGCTCGAAGCGAAAGAGCTAACTGAATACTTAAGCAAAAATGGCAACAAGTGGATCCCGCTTCCTCAAGATTACCTCCATGCTCTAGATGTCGTACTGAGGGAAAGCTCGGTTGAGAAAAGTATTCAAGTTGGTCGATCGCTCTATTCGAAATCAATGTGGGGATGTGAAGAAATTGGTGGTGGAGCTGTTGGATTGAGAGGCTTTTTTCAAAGCCTTCGTCCTACTCAGCAAGGTCTAGCTATGAATGTGGATTGCTCAGTCACCGCCTTCCATGAAAGTATTGGAGTAATTCCGTATTTGCAAAAACGCCTCCACTTTCTCCGAAGCGTCTCAAAAACTACAGATTTAAGCCCTGACGAAAGAAGAGAAATCGAAAAGGCGATGAAGAACATTCGAATTTTTGTTTGTCATAGAGAAACTGTTCAGAAATATAGAGTTTACGGATTGACAGAGGAAACTACTGAAAATTTATGGTTTCCTGATAGAAATGGGAAGAATTTGAAGCTAGTGAATTATTTTAAGGATCATTATGACTACGAGATACAGTTTTTAAACTTACCGTGCTTGCAGATTAGTAGAAGTAAACTTTGTTATCTTCCCATGGAGCTTTGTGTTATCTGCGAAGGCCAGAAATTTCTCGGAAAGCTTTCCGATGATCAGACTGCAAGAATTCTTAAAATGGGCTGTCAAAAACCTAAGGAAAGGAAAGCCGACATCGACGGAATTATGCAAGCACCGTCAGGGCCGGCAAGGGGGGGAAGAGAGTTCAAGCTTCAAGTTTCGACGGAAATGACACGACTAAAAGGTAGAATTTTGCAGCCTCCAAAGCTTAAGCTAGGTGATGGAGGAAATATTCGGGAGCTTATCCCGTCACGCCATGATCGTCAATGGAACCTATTCGACTGTCATGTATTTGAAGGAACGATAATCGAAAGGTGGGGTTTGATTAGTTTTGGTGGAACTATTGATCAGAAATCAAACATACCGAAATTTATACACCAGCTATCGAAAAGGTCCGAGGAATTGGGTATTTTTCTAAGCAAAAACACAGTCGTTGGCCCTCAATTCGAACCGATGAAAGTCCTCAACAACGTGACTGTTTTGGAATCTAAACTCAAGAAAATTCATAGACTTGCATCCAGAAATTTGCAGCTCTTGATATGCGTGATGGAGCGAAAACACAAAGGATATGCAGATCTGAAGCGAATTGCGGAGACGAATATTGGCGTGGTTAGTCAATGCTGTTTATACCCAAATCTCAGCAAGTTGAGCTCTCAATTTCTAGCCAATTTAGCTCTCAAAATCAATGCAAAAGTCGGGGGGTGCACGGTTTCTTTGTTCAATCCACTACCATCTCAGATTCCTCGTCTTTTTGGGTCTAACGAACCGGTTATCTTTATGGGTGCTGATGTAACTCATCCTCACCCTTTAGACGACTTTAGCCCCTCGGTTGCCGCGGTAGTTGGAAGCATGAATTGGCCTGCAGCCAATAAATATATGTCGAGAATGCGATCTCAAACCCATCGACAAGAAATCATTCTCGATCTGGCAAAGATGGTTGAAGAATTGCTCGAGGAATTTCGCCAATCGGTAAATGAATTTCCGAGGCGAATTATATTCTTTCGAGACGGAGTAAGCGAGACCCAATTCTATAAAGTTCTTAAAGAAGAGTTGCAGGCTATTAAAAAGGCTTGTTCTAGATTTCCAAACTACAAACCTCCAATTACATTTGCAGTGGTTCAGAAGAGGCATCACACGAGGCTGTTTCCGTTCAAAAGCGACCCCTTTTTGAACCAAAACCAATGTTTCGATGAAAATATTCCGCCAGGAACTGTGGTCGATACGGTAATTACTCACCCGAAAGAGTTTGATTTCTTTTTGTGCAGCCATTGGGGGATGAAGGGGACCAGCCGACCGACACATTACCACGTGTTGTGGGATGAAAACGAGTTCACTTCCGATGAGCTTCAGAAACTGGTTCATAATTTGTGCTACACCTATGCAAAATGCACTAAACCGGTTTCGTTGGTGCCTCCAGTTTATTATGCACACCTTGCCGCCTACAGAGGCCGGCTTTATCTTACACAATCCGATTCGAATTCAACTATTTCCAGAGCTGCTCCTCCTAAGACGACTCCGCTGCCTGAACTCAGCGAAAATGTTAAGAAACTTATGTTTTATTGCTGA 3015 42.26 MEESNTSKKCNPRTGSFRGRSTSNLHEYQNQNRQFLQYSSHNGFGYQNQYMRYYPFFLPLPPPIPLHLALPPPPPQNQSFWINTHLQKPYCKLDAPPLMAAPDTHLPIVKISAGKLLFYFPFLLIKGTGIKREMGRLGERKMEVIMAAKRPDSGGVEGSVISLLANHFLVRFDPSQKIFHYNVEISPNPSKEICRLIKQQLVEENSDLLSGASPAYDGRKNLYSPVEFNKDRLDFCVNLPIPTTKMAISKEESNNTQSKNQKQLKMFRINIRLVSKLEAKELTEYLSKNGNKWIPLPQDYLHALDVVLRESSVEKSIQVGRSLYSKSMWGCEEIGGGAVGLRGFFQSLRPTQQGLAMNVDCSVTAFHESIGVIPYLQKRLHFLRSVSKTTDLSPDERREIEKAMKNIRIFVCHRETVQKYRVYGLTEETTENLWFPDRNGKNLKLVNYFKDHYDYEIQFLNLPCLQISRSKLCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQKPKERKADIDGIMQAPSGPARGGREFKLQVSTEMTRLKGRILQPPKLKLGDGGNIRELIPSRHDRQWNLFDCHVFEGTIIERWGLISFGGTIDQKSNIPKFIHQLSKRSEELGIFLSKNTVVGPQFEPMKVLNNVTVLESKLKKIHRLASRNLQLLICVMERKHKGYADLKRIAETNIGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVSLFNPLPSQIPRLFGSNEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYMSRMRSQTHRQEIILDLAKMVEELLEEFRQSVNEFPRRIIFFRDGVSETQFYKVLKEELQAIKKACSRFPNYKPPITFAVVQKRHHTRLFPFKSDPFLNQNQCFDENIPPGTVVDTVITHPKEFDFFLCSHWGMKGTSRPTHYHVLWDENEFTSDELQKLVHNLCYTYAKCTKPVSLVPPVYYAHLAAYRGRLYLTQSDSNSTISRAAPPKTTPLPELSENVKKLMFYC 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1501899 1505402 - Bma013123.1 Bma15g00144 96266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00144 1004 SMART PAZ_2_a_3 377 506 IPR003100 GO:0005515
Bma15g00144 1004 PANTHER PROTEIN ARGONAUTE 7 140 1003 - -
Bma15g00144 1004 Pfam Argonaute linker 1 domain 318 367 IPR014811 -
Bma15g00144 1004 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 140 1003 - -
Bma15g00144 1004 Pfam PAZ domain 385 500 IPR003100 GO:0005515
Bma15g00144 1004 Pfam Piwi domain 662 967 IPR003165 GO:0003676
Bma15g00144 1004 SUPERFAMILY Ribonuclease H-like 647 969 IPR012337 -
Bma15g00144 1004 CDD Piwi_ago-like 530 970 IPR045246 -
Bma15g00144 1004 ProSiteProfiles Piwi domain profile. 661 971 IPR003165 GO:0003676
Bma15g00144 1004 MobiDBLite consensus disorder prediction 1 23 - -
Bma15g00144 1004 Gene3D paz domain 363 488 - -
Bma15g00144 1004 MobiDBLite consensus disorder prediction 8 23 - -
Bma15g00144 1004 SUPERFAMILY PAZ domain 364 520 IPR036085 GO:0005515
Bma15g00144 1004 SMART Piwi_a_2 661 971 IPR003165 GO:0003676
Bma15g00144 1004 Pfam N-terminal domain of argonaute 161 308 IPR032474 -
Bma15g00144 1004 Gene3D - 547 723 - -
Bma15g00144 1004 SMART DUF1785_2 317 369 IPR014811 -
Bma15g00144 1004 ProSiteProfiles PAZ domain profile. 377 484 IPR003100 GO:0005515
Bma15g00144 1004 Gene3D - 735 1004 IPR036397 GO:0003676
Bma15g00144 1004 CDD PAZ_argonaute_like 372 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00144 K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C - qsu:112006217 1492.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00429 Bma-Chr14:5006971 Bma15g00144 Bma-Chr15:1501899 8.46E-168 dispersed
Bma14g00876 Bma-Chr14:9884168 Bma15g00144 Bma-Chr15:1501899 3.27E-16 dispersed
Bma15g00144 Bma-Chr15:1501899 Bma08g00120 Bma-Chr8:1483433 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g952 . . . . . . . Bma15g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007995 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00144 Bma_Chr15 FPKM 10.477612 10.895513 0.0 0.0 0.0 0.0 0.0 0.698137 0.200718 0.527452