Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00158 ATGAGCGATCAGTTGGTTATGTATGTGGATCGTATGACGAGACCAAAGGCTGTCCAGCCGGTTCCAGAGCCGGATGAGATTGTTCCTCTCATCCCCAGGGAAGTCGATGTGACCTCAGATGCTGGGAATTCTTTGTGTTCTTCGTCTGCCGGAACGGCTGTAAATAATACGAAAATGGAGCAGAATGAGGCCTTGGGAGGAGAGGAGACGCCGCTGATTCAGGCGGTTGAGTGCCGTATTTGTCAGGAGGAGGAAGATGTCAAGAATTTGGAAACCCCGTGTGCCTGTAGCGGTAGTCTCAAGTTTGCTCATAGGAAGTGCGTTCAACATTGGTGTAATGAGAAAGGAGATATAATCTGTGAGATATGTCATCAGCCTTACCAACCTGGTTATACTGCTCCATCTCTGCCCCCTCAGGCTGAAGAAATTGCAATTGATATTGGTGGAGGATGGACAATTTCTGGCACTCCTTTGGATTTGCATGATCCCCGGCTCTTGGCAATTGCTGAGGCTGAACGTCGTTTCTTGGAGGCAGAATATGATGAGTATGCATCTTCAAACTCCAGTGGAGCTTCATTTTGTCGTTCTGCGGCCCTTATTTTCATGGCTCTTCTTCTCTTGCGTCACTCATTGTCAGTCACAGATCCTGATGGCGATGATGATGCATCTGCCTTTTTCTCTATATTCTTGCTTCGTGCTGCTAGGTTTCTTTTACCTTGCTACATTATGGCTTGGGCCATTAGTATCCTGCAGCGCCGGCGCCAAAGACAGGAGGCTGCAGTGTTGGCTGCAACACAAGTTGCTTTTGTGCTACAATCTGGGCAACATAGAGGCCTGCAGTTTACTTTAGCACCTGGACCACCAGCAACTTCTAATCCTGAGACAGTTTAA 891 48.04 MSDQLVMYVDRMTRPKAVQPVPEPDEIVPLIPREVDVTSDAGNSLCSSSAGTAVNNTKMEQNEALGGEETPLIQAVECRICQEEEDVKNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPSLPPQAEEIAIDIGGGWTISGTPLDLHDPRLLAIAEAERRFLEAEYDEYASSNSSGASFCRSAALIFMALLLLRHSLSVTDPDGDDDASAFFSIFLLRAARFLLPCYIMAWAISILQRRRQRQEAAVLAATQVAFVLQSGQHRGLQFTLAPGPPATSNPETV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1664058 1666412 + Bma013138.1 Bma15g00158 96280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00158 296 CDD RING_CH-C4HC3_MARCH 78 124 - -
Bma15g00158 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 133 IPR013083 -
Bma15g00158 296 SUPERFAMILY RING/U-box 76 128 - -
Bma15g00158 296 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 285 IPR033275 -
Bma15g00158 296 Pfam RING-variant domain 78 123 IPR011016 GO:0008270
Bma15g00158 296 Coils Coil 166 186 - -
Bma15g00158 296 ProSiteProfiles Zinc finger RING-CH-type profile. 70 130 IPR011016 GO:0008270
Bma15g00158 296 Pfam Protein of unknown function (DUF3675) 129 247 IPR022143 -
Bma15g00158 296 SMART ringv_2 77 124 IPR011016 GO:0008270
Bma15g00158 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00158 - - - cpap:110809157 426.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00099 Bma15g00158 CCT
Bma01g00099 Bma15g00158 ECH
Bma14g01644 Bma15g00158 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00433 Bma-Chr12:10885920 Bma15g00158 Bma-Chr15:1664058 8.86E-10 dispersed
Bma13g00064 Bma-Chr13:761605 Bma15g00158 Bma-Chr15:1664058 2.03E-41 dispersed
Bma14g01619 Bma-Chr14:33929093 Bma15g00158 Bma-Chr15:1664058 2.19E-173 dispersed
Bma01g00469 Bma-Chr1:3877055 Bma15g00158 Bma-Chr15:1664058 7.07E-52 transposed
Bma02g00494 Bma-Chr2:7962576 Bma15g00158 Bma-Chr15:1664058 9.41E-41 transposed
Bma01g00099 Bma-Chr1:1051882 Bma15g00158 Bma-Chr15:1664058 2.35E-128 wgd
Bma14g01644 Bma-Chr14:34761088 Bma15g00158 Bma-Chr15:1664058 2.50E-174 wgd
Bma15g00158 Bma-Chr15:1664058 Bma03g00831 Bma-Chr3:7739139 1.92E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00158 Bma_Chr15 FPKM 14.823668 16.530363 7.606023 7.548615 11.574841 9.136058 11.011153 14.075257 13.691733 13.099518