Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00167 ATGGCCTGTTTTCCGGCGAACAAGAAGGAGAAGTATGATGTTCATGGAGTTATCACCATCCTCGCTATTTTGCTTTCTCTACTTGCAGTTTCGAATCTCACTCAAGCAGAATGGATAAATCATGGAAATGGTTTATCAAACCGGAGAAATGCTGAAAAAGAGAAGCGGATCAACAATAGAACAGTGTCCAGGCTGAGATTGAAATGGACATTTTTTGCTGGTAAAGACATATCTGCTACTCCGGCAGTGGCTGATGGGGTCGTCTATTTTCCATCTTGGAATGGATATCTCTACGCTGTTAACGCCTTTGATGGCAGTCTGATATGGAGGCAGAATCTAAGCCAGCTTACGGGATTAACAGGAACCGGAGTTGTTGTCAACGTCACGGTTTCAAGGTCAACTCCGACCGTCACGGGTGACCTTCTGATCGTCGGAATTTACGGTCCGGCCGTTGTGATTGCCGTCACTAGATCAAGTGGAAGATTGGTTTGGTCAACTCAGCTCGATAAGAATCCCCTTAGACAAATCACTATGTCTGGCACTGTTTATAAAGGGGCATTTTACGTCGGGGTATCATCACTAGAAGTAACGTTACCAGCTTCACAATGTTGCACGTTTAGAGGGAGTTTAGCAAAATTAGATGTCCGTACCGGACGAATCCAGTGGCGGACATATACGCTTCCGGACAATGGAGGTAAATTAGGGGGCTATGCGGGCGCAGCGATATGGGGAAGCAGCCCGGCCATTGACATCTACAGGAGGCATGTCTATGTAGGCACGGGGAACCTCTACATAGCTCCGAGGGAGGTGCTTGAATGCCAAGAGCGACAAAATAATCAATCAAACCCGAGCCAACCTGACCAATGTTTTGGCCCAGATATTCATTTTGACTCGATTTTAGCCTTTGATATTAACACAGGCCGAATCGTTTGGTCGAAGCAATTGGGTGGCTACGATGTGTTTTACTTCGTTTGTTTGATACCTAATAATCCCGATTGCCCGCCCGGACCTAATCTAGATGCGGACTTTGGAGAAGCGCCAATGTTACTCACAATTTACCCTAATGGCACCAAGAGAGGGCGCGAGGTAGTGGTGGCTGTGCAGAAGAGTGGCTTTGCATGGGCTCTTGACCGTGACAATGGCAACATAGTTTGGTCCAAGTTGGCAGGGCCAGGAGGACTAGAGGGAGGAGGCACTTGGGGAGCAGCCACGGACGAAAAGCGGGTGTACACGAACATAGTCAACAGCGAGAACAAGCTATTCAGGCTCTCACCGTCCAGCCAGACCACCACGGCCGGTGGCTGGGTAGGTCTGGATGCAAATTCCGGCCAAATCATCTGGACAACCGCAAATCCTAGCAACGAGACTGCAAATGCTCCAGTCTCTTTAGCCAACGGAGTTCTTTTTGCTGGGTCAGTGGCTCCAAATGGCCCAATATACGCAATGGATGGTGAAACCGGTCGTATTCTTTGGTCTTACGACACGGGAGCCACCGTGTACGGGGGCATAGCCGTGAGTTACGGCTGCATTTTCCTCGGAAACGGATACAAGATTGGATTGGCTGATTTTCATCCTACTTGGACAACTGGAACTTCACTCTATGCATTTTGCATATCTTGA 1620 48.58 MACFPANKKEKYDVHGVITILAILLSLLAVSNLTQAEWINHGNGLSNRRNAEKEKRINNRTVSRLRLKWTFFAGKDISATPAVADGVVYFPSWNGYLYAVNAFDGSLIWRQNLSQLTGLTGTGVVVNVTVSRSTPTVTGDLLIVGIYGPAVVIAVTRSSGRLVWSTQLDKNPLRQITMSGTVYKGAFYVGVSSLEVTLPASQCCTFRGSLAKLDVRTGRIQWRTYTLPDNGGKLGGYAGAAIWGSSPAIDIYRRHVYVGTGNLYIAPREVLECQERQNNQSNPSQPDQCFGPDIHFDSILAFDINTGRIVWSKQLGGYDVFYFVCLIPNNPDCPPGPNLDADFGEAPMLLTIYPNGTKRGREVVVAVQKSGFAWALDRDNGNIVWSKLAGPGGLEGGGTWGAATDEKRVYTNIVNSENKLFRLSPSSQTTTAGGWVGLDANSGQIIWTTANPSNETANAPVSLANGVLFAGSVAPNGPIYAMDGETGRILWSYDTGATVYGGIAVSYGCIFLGNGYKIGLADFHPTWTTGTSLYAFCIS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1774526 1776669 + Bma013148.1 Bma15g00167 96289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00167 539 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 38 538 - -
Bma15g00167 539 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 34 501 IPR011047 -
Bma15g00167 539 Pfam PQQ-like domain 77 312 IPR002372 -
Bma15g00167 539 Pfam PQQ-like domain 375 497 IPR002372 -
Bma15g00167 539 SMART ire1_9 135 167 IPR018391 -
Bma15g00167 539 SMART ire1_9 460 494 IPR018391 -
Bma15g00167 539 SMART ire1_9 81 112 IPR018391 -
Bma15g00167 539 SMART ire1_9 255 314 IPR018391 -
Bma15g00167 539 SMART ire1_9 402 450 IPR018391 -
Bma15g00167 539 SMART ire1_9 180 225 IPR018391 -
Bma15g00167 539 PANTHER POLYVINYLALCOHOL DEHYDROGENASE-LIKE 38 538 - -
Bma15g00167 539 Gene3D - 26 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00167 - - - jre:108985021 786.178
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g871 . . . . . . . Bma15g00167 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0973 . . . . . . . Blo06g00897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006756 0 0 1 1 1 1 0 1 2 1 1 1 0 1 0 0 1 4 0 1 1 2 1 0 2 1 1 1 1 8 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00167 Bma_Chr15 FPKM 86.907013 86.634277 37.431648 46.540028 38.365757 33.565067 38.149342 79.606964 80.779236 77.026436