Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00168 ATGAAGCGCGAGATAGCTAAGCTGGTGGCAGATGGGTTGCACAAGGAAGCAATTTCCTTATACTCAATGCGCCGCTCTGCTTCACTCCACCCTGACAATTTCACCTTCCCCCCTCTCCTCAAAGCCTGCACTAAGCTCAATTCACCACCACTGGGCCAAATGGTCCATGCGCAAGTGATAAAGACAGGATTTTCATCCGATGTTTATCCAGCCACCGCTCTCACTGATATGTATATGAAATTTAGTTGTCCCGGTGATGCCGTTAAGGTGTTTGATGAGATGCCCCTCAGAAATTTGGCGTCTTTGAATGCTATTATATCTGGGTTTTCCTTGAATGGGTGTAGTAGAGAAGCCTTGTGTGCTTTCAAAGAGATGGATTTTAATAGGTTGAGGCCTAATTCAACCACAATTGTTTGTTTGCTGTCTGGTTGCGGTAGTATTGCGAATGGAATGGAGATTCAGTGCTGGTCGATTAAGTTGGGAATTCAATTCGATGTTTACGTTGCAACTGCACTTTTGACTCTGTATTTGAGTTGTAGAGAGTTTGTTTCTGCTGAAAAGGTGTTCGAAGAAATGTCTTACAAGAATGTAGTGAGTTATAATGCCTTCATGTCAGGACTTTTACAAAACGGCATGCCGTTTAACGTCTTGGATGTATTCAAGAGAATGAGAGGAAGGCCAAATTGTGAAATAAATGCAGTTACATTAGTTTCTGTCGTTGCAGCTTGTTCTTGTCTTTTCAATCTTCGAGTTGGTCAGCAGGTCCATGGTCTTGCGGTGAAACTTGAATTGGAAAATCCAATGCTTGGAAATGCTTTGGTGGATATGTATTCCAAATGTGGGGCTTGGATGTGTGCTTACTCCATCTTCAAAGAGCTGAAAGGAATCAGGGATCTGTATACATGGAATTCTCTACTTGCTGGAATGATGATTAATGATCAAGCCGAAATTGCAATTGAACTATTCGAACTTTTAGAATCTGAAGGAGTTGAACCCGATTTGGTGACATGGAATTCGATGATTAGTGGGTTTTCACAGCTTGGGAGAGATCGTGAAGCATTTAACTTCTTTAAAAGAATGCAATCAACTGGGAAAGGCCCTAATTTAAGATCTCTTACCAGTCTTTTGTCAGCTTGTTCAAACACATCTTCTTTACAGCGTGGGGAAGAGATCCATGGATATGCCATCAAAAACTTCATTACAACCGATGCTTTCATGGCTACAGCCCTTATAGACATGTACATGAAGAGTGGCCATTCTTGTCGGGCAAGAAGAATATTTGATTTGTTCGACAAAAAGCCTAATGATCCAGCGTTTTGGAATGCAATGATCTCAGGGCATGGGAGAAATGGAGAAAATGAATCTGCATTTGAAATATTTTACCAAATGTTGGAAGAGAAGGTGAATCCAACTGTCCCCACCTTTACTAGCATTCTATCTGTGTGTAGTCATACTGGTCGGGTTGAGAAAGGATGGCAAATTTTTAGAATGATGAAGTGTGAATTCGCCCTCCAGCCAATTCTTGATCATTATGGCTGCATGATCGACCTTCTGGGTAGATCTGGTCAGCTGGACAAAGCTCGAGAGATAATTCGAGATCTTCCATATCCTTCTTCTTCGATATTTTCTTCATTGCTTGGTGCTTGTCGGTATCATTTAGATTCAGAGCTGGGTGAAGAAATGGCCATGAAAATTTTCGAGTTAGAGCCAGAAAACCCAACTCCGTTCGTAATTCTATCAAACATCTATGCCGCTTTAGAACGGTGGGAGGACGTTGAAAGGATTAGAGAAATTATGGATAGTAAAGGCCTCACAAAACTGCCTGGTACTAGTTGGAGTGACATAAAGGAGAGCACATCCAACTAG 1866 41.75 MKREIAKLVADGLHKEAISLYSMRRSASLHPDNFTFPPLLKACTKLNSPPLGQMVHAQVIKTGFSSDVYPATALTDMYMKFSCPGDAVKVFDEMPLRNLASLNAIISGFSLNGCSREALCAFKEMDFNRLRPNSTTIVCLLSGCGSIANGMEIQCWSIKLGIQFDVYVATALLTLYLSCREFVSAEKVFEEMSYKNVVSYNAFMSGLLQNGMPFNVLDVFKRMRGRPNCEINAVTLVSVVAACSCLFNLRVGQQVHGLAVKLELENPMLGNALVDMYSKCGAWMCAYSIFKELKGIRDLYTWNSLLAGMMINDQAEIAIELFELLESEGVEPDLVTWNSMISGFSQLGRDREAFNFFKRMQSTGKGPNLRSLTSLLSACSNTSSLQRGEEIHGYAIKNFITTDAFMATALIDMYMKSGHSCRARRIFDLFDKKPNDPAFWNAMISGHGRNGENESAFEIFYQMLEEKVNPTVPTFTSILSVCSHTGRVEKGWQIFRMMKCEFALQPILDHYGCMIDLLGRSGQLDKAREIIRDLPYPSSSIFSSLLGACRYHLDSELGEEMAMKIFELEPENPTPFVILSNIYAALERWEDVERIREIMDSKGLTKLPGTSWSDIKESTSN 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1794749 1796614 + Bma013149.2 Bma15g00168 96290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00168 621 Pfam E motif 552 612 IPR046848 -
Bma15g00168 621 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 611 - -
Bma15g00168 621 Gene3D Tetratricopeptide repeat domain 253 393 IPR011990 GO:0005515
Bma15g00168 621 Gene3D Tetratricopeptide repeat domain 152 250 IPR011990 GO:0005515
Bma15g00168 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bma15g00168 621 Gene3D Tetratricopeptide repeat domain 1 151 IPR011990 GO:0005515
Bma15g00168 621 PANTHER OS07G0578800 PROTEIN-RELATED 6 611 IPR045215 GO:0003723|GO:0009451
Bma15g00168 621 Gene3D Tetratricopeptide repeat domain 436 619 IPR011990 GO:0005515
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 440 471 IPR002885 -
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 474 500 IPR002885 -
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Bma15g00168 621 TIGRFAM PPR: pentatricopeptide repeat domain 101 133 IPR002885 -
Bma15g00168 621 Pfam PPR repeat family 439 482 IPR002885 -
Bma15g00168 621 Pfam PPR repeat family 332 380 IPR002885 -
Bma15g00168 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 271 294 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 170 196 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 510 533 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 300 330 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 198 225 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 101 125 IPR002885 -
Bma15g00168 621 Pfam PPR repeat 72 97 IPR002885 -
Bma15g00168 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Bma15g00168 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Bma15g00168 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00168 - - - qlo:115982888 777.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00168 Bma-Chr15:1794749 Bma09g00770 Bma-Chr9:46248388 2.24E-17 dispersed
Bma15g00168 Bma-Chr15:1794749 Bma02g01043 Bma-Chr2:51951043 1.47E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g863 . . . . . Bpe10g00857 . Bma15g00168 Cmo04g01715 . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0966 . . . . . . . . . . . . . . . . . Cma04g01637 . Car04g01678 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015078 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 14
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00168 Bma_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 22.990101 0.0 0.0 0.0 0.0