Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00173 ATGGAGTTTTTCAGCAAAACTACGGCCGTTAAAATACGAGGCCACCTCGACAAATACCTGGTCGCTGATGACGACGGTGAAACTATTCGACAGAGTCGGAACGGCTCGTCTCACCGAGCCGTATGGATAGTTGAACCAGTAGAGAATAAAGCAGACACCGTTCGCCTGAAAACCTGCGACGGTCGGTACCTGACCGCCACAAACTTACAGTTTCTGCTCGGTGTGACGGGGAAGAAAGTGAGCCAGACCGTCCCGGAGAATCTCTCTGTCTGGATGATTCAGTGGGAGGTGATAAGAGATGGGTTTCAGGTGAAACTGAGGAGCTGGTTTGGCACTTTTCTCCGGGCGAACGGCGGAACTCCGCCGTGGAGAAACTCGATCACGCACGATGAGCCGCAAGCTACTTCGACGAAGAATTGGATTCTGTGGGACGTTCAGGCTGCTCAAGTACCGGCGGGTGAGGCGGCGTTGGATCATGTCTTGTCTATGTCGGGCTTTTCTTCGATTGGCTCCGGTGAGTTTCCAGCGTCCGAGCCTGCTTCGCCGATGTTTACGAAGACAGAGGCGAAGCCTCCAAGAGTTTGTACTAACTTCCATGCCACATTCTCCTCCGGCAAGTTCCGTTCCGGCATGAATTTCTTCCATAACGCCAAGACCGTCCGTCTTTGTGGTCACCACAACAAGTATCTCATAGCCAAAGACGACGAAGAGTCAGTGGGACAAGACCGTAATGGGTCCGGGAAAAACGCTCGATGGACCGTCGAGCTCATCAACGGCTTGGATTCCGTCATCCTTTTCAAAAGTTGCTACGGGAAGTACCTAACCGCCTCGAGCCTGCCATTTCTGAGCATGACGGGTCAGAAAGTGCTCCAGACTCGGCCCAGCCTGCTCGATTCGTCGGTGCAGTGGGAGCCTCTCAGGGAAGGGACTTTGGTCAAGTTTAGGACGCGGGACGGACAATTCTTGAGGGCCAACGGGAGTTTGCCACTATGGCGAAACTCTGTCACCTGTGACATTCCTCGGAGAACCATAACTCAGGATTGGATCCTCTGGAATGTTGATGTAATGGAGATTCTAGTTCAGTCTGCAATAGACAAGCCTCTGATAAAACCAGACTTTGCCCACTTAGAGTCGCCGGATTCCAACTCTAGTTCCTCCTCGCCGGCGTCCGTTAAATCCTGTCGTCTTTCCCGGAAAGAGGTTGATCACAAGTTATCGAATGATTCTGCCGTTGATTCTCCGCGGAAAGGAGAAGGAAGAACGATATACTATCAGCTAGTCGACGAGAACGGCGACGGAGGAGATGATGTGAGTCCGGTGAAGTATTGTTTAACATTTAAGGGAAGTGGGGTGGAGGAATTGACTCGTAAACTGGAAGAAGAGACGGGTTTACATGGTCTGCTCGTCTGCGCTCGAAGTCCTCTGAACGGAAATCTTTACCCGCTTCGCCTGCAGCTGCCTCCCAACAATTCAACCATGCACGTCGTCCTGGTTCTCAACTCATCCTCACGTGAGCTTTGA 1521 52.07 MEFFSKTTAVKIRGHLDKYLVADDDGETIRQSRNGSSHRAVWIVEPVENKADTVRLKTCDGRYLTATNLQFLLGVTGKKVSQTVPENLSVWMIQWEVIRDGFQVKLRSWFGTFLRANGGTPPWRNSITHDEPQATSTKNWILWDVQAAQVPAGEAALDHVLSMSGFSSIGSGEFPASEPASPMFTKTEAKPPRVCTNFHATFSSGKFRSGMNFFHNAKTVRLCGHHNKYLIAKDDEESVGQDRNGSGKNARWTVELINGLDSVILFKSCYGKYLTASSLPFLSMTGQKVLQTRPSLLDSSVQWEPLREGTLVKFRTRDGQFLRANGSLPLWRNSVTCDIPRRTITQDWILWNVDVMEILVQSAIDKPLIKPDFAHLESPDSNSSSSSPASVKSCRLSRKEVDHKLSNDSAVDSPRKGEGRTIYYQLVDENGDGGDDVSPVKYCLTFKGSGVEELTRKLEEETGLHGLLVCARSPLNGNLYPLRLQLPPNNSTMHVVLVLNSSSREL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1839260 1841538 - Bma013154.1 Bma15g00173 96295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00173 506 Gene3D - 219 351 - -
Bma15g00173 506 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 193 503 - -
Bma15g00173 506 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 150 - -
Bma15g00173 506 SUPERFAMILY Actin-crosslinking proteins 7 145 IPR008999 -
Bma15g00173 506 MobiDBLite consensus disorder prediction 395 415 - -
Bma15g00173 506 MobiDBLite consensus disorder prediction 377 393 - -
Bma15g00173 506 MobiDBLite consensus disorder prediction 376 416 - -
Bma15g00173 506 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 193 503 - -
Bma15g00173 506 SUPERFAMILY Actin-crosslinking proteins 215 355 IPR008999 -
Bma15g00173 506 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Bma15g00173 506 Pfam Domain of unknown function (DUF569) 211 351 IPR007679 -
Bma15g00173 506 Gene3D - 5 148 - -
Bma15g00173 506 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00173 - - - qsu:112040043 583.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00078 Bma15g00173 CCT
Bma06g00656 Bma15g00173 CCT
Bma01g00078 Bma15g00173 ECH
Bma06g00656 Bma15g00173 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00665 Bma-Chr6:35789348 Bma15g00173 Bma-Chr15:1839260 0 dispersed
Bma01g00078 Bma-Chr1:757763 Bma15g00173 Bma-Chr15:1839260 5.57E-48 wgd
Bma15g00173 Bma-Chr15:1839260 Bma06g00656 Bma-Chr6:35322566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00173 Bma_Chr15 FPKM 6.629894 8.854827 8.872109 8.703144 11.203997 12.381572 11.920835 11.577586 10.317472 10.722515