Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00177 ATGGGAATTCTTGCATCACTAAGTGTAATCAACCTCTTCTCCTCCCTTCCTTCAAAGCCACCTCCGAATGACGCCATGGCCGCCTCTTTCTCAGCTCCCTCTCCCCCTATTCCCATTCCTAAATACCCTCCACCCAAATCTAGAACTCCCCTTCCTACGGCGGCGCCACCCAATCCCGCTCTCAAGACTTTCCACCGCCGAACAAAATACTTCAAACCAATTAAGGACGGCGTCATATCCTCCGACGGAGATCGTTCCGTCGTCTTGGGTGACTCCGGTGTATCATATCAACTTCCCGGAGCTCCATTCGAGTTTCAGTACAGCTATTCCGAGATCCCCAAGGAAAAGCCATTGGCAATTCGGGAGCCAGCTTTCTTACCGTTTGCGCCTCCTACTATGTCGAGGCCTTGGACTGGTAAAGCCCCATTGAAGAGCTCCAAGAAAAAGATTCCTCTTTTCGATTCGTTCAATCCACCCCCACCAGGGTCAAAAGGAGTGAAGCACATGGAGATGCCGGGTCCGTTTCCATTCGGAAATTATCCGAAGGAGGTGAAAACTCGGCAGGAGATACTTGGGGAACCACTAAAGAAGTGGGAGATTCAAATGCTTGTAAAACCATATCTATCTGATAATCGCCAAGTTAATCTCGGAAGGGATGGATTGACTCACAATATGTTGGAATTGATTCATTCGCATTGGAAGCGGCAGAGAGTTTGTAAAGTTAAATGTAAAGGTGTTCCGACTGTTGATATGAATAACATTTGCCGCCACGTTGAGGTGCTGATTCTGTTATTTAAAATGTCAAATAACTGTCTGCTGAATGTCTATTTCTTAAATATGATGCTATGGAAGCCAGCAGCTCCTGTCTATCCAAAACTTGTTCAAGACGCACCAGAAGGACTGACAAGAGATGAAGCTGATGAGCTTCGGATGAAAGGAAAAAAACTTTTGCCAATTTGCAAATTAGGTACCTCTGCTTCCATTACTTTTGCTCTTCTGAAGCCATTATCTTGTTATCTGTCTAGATTTCCAATTTTTTTACCTGTCTTTTTGGCTGCTAGCACGATAGAGATGCTAACAGTCTATGAAGCACCAAAACATTGA 1104 45.2 MGILASLSVINLFSSLPSKPPPNDAMAASFSAPSPPIPIPKYPPPKSRTPLPTAAPPNPALKTFHRRTKYFKPIKDGVISSDGDRSVVLGDSGVSYQLPGAPFEFQYSYSEIPKEKPLAIREPAFLPFAPPTMSRPWTGKAPLKSSKKKIPLFDSFNPPPPGSKGVKHMEMPGPFPFGNYPKEVKTRQEILGEPLKKWEIQMLVKPYLSDNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVKCKGVPTVDMNNICRHVEVLILLFKMSNNCLLNVYFLNMMLWKPAAPVYPKLVQDAPEGLTRDEADELRMKGKKLLPICKLGTSASITFALLKPLSCYLSRFPIFLPVFLAASTIEMLTVYEAPKH 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1878430 1880876 - Bma013159.1 Bma15g00177 96299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00177 367 MobiDBLite consensus disorder prediction 33 57 - -
Bma15g00177 367 SMART CRS1_YhbY_2 195 266 IPR001890 GO:0003723
Bma15g00177 367 Pfam CRS1 / YhbY (CRM) domain 197 260 IPR001890 GO:0003723
Bma15g00177 367 ProSiteProfiles CRM domain profile. 193 295 IPR001890 GO:0003723
Bma15g00177 367 Gene3D - 194 263 IPR035920 -
Bma15g00177 367 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 5 324 IPR044599 GO:0000373
Bma15g00177 367 SUPERFAMILY YhbY-like 194 260 IPR035920 -
Bma15g00177 367 MobiDBLite consensus disorder prediction 18 59 - -
Bma15g00177 367 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 5 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00177 - - - cmo:103488994 477.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01799 Bma15g00177 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00817 Bma-Chr6:41784391 Bma15g00177 Bma-Chr15:1878430 1.24E-86 dispersed
Bma07g01300 Bma-Chr7:48601927 Bma15g00177 Bma-Chr15:1878430 4.20E-37 dispersed
Bma14g01799 Bma-Chr14:38592848 Bma15g00177 Bma-Chr15:1878430 3.20E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
Vvi1g677 . . . . . . Bma14g01799 Bma15g00177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00177 Bma_Chr15 FPKM 0.0 3.992716 0.0 0.0 8.015343 0.0 0.0 0.0 0.0 0.0