Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00186 ATGGATTTTGCCGGTTTAGTTTTGGTAGATCTGTTGGATATGGCGGATTCAAAACCAGGACTGAGAAAACCGGTCTTCACCAAGGTCGACCAGCTCCGGCCAGGAACCAACGGACACACACTTACCGTCAAGGTTGTTAGCACCAAGATGGTTTTGCAGAAAGGTCCTCAGCCGCGTCAAATGCGCATTTCCGAGTGCTTGGTCGGTGACGAGACTGGACTGGTTATATTTACTGCCAGAGACGACCAAGTGGAGTTGGTGAAAGAGGGCAGTACTATAATCTTAAGAAATGTGAAGATCGATATGTTTAAAGGATCGACGAGACTTGCTGTGGATAAATGGGGAAGAGTCGAAGTCGCCGAGCCGGCTAGTTTTACCGTGAAAGACGATAACAATCTGTCGCTGATCAAGTACGAGCTAGTTAATGCTGTCTGTTAG 438 47.49 MDFAGLVLVDLLDMADSKPGLRKPVFTKVDQLRPGTNGHTLTVKVVSTKMVLQKGPQPRQMRISECLVGDETGLVIFTARDDQVELVKEGSTIILRNVKIDMFKGSTRLAVDKWGRVEVAEPASFTVKDDNNLSLIKYELVNAVC 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1932753 1933264 + Bma013168.1 Bma15g00186 96308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00186 145 CDD SoSSB_OBF 40 119 - -
Bma15g00186 145 PANTHER OS05G0244600 PROTEIN 14 144 - -
Bma15g00186 145 Gene3D - 36 135 IPR012340 -
Bma15g00186 145 PANTHER BNAA07G09820D PROTEIN 14 144 - -
Bma15g00186 145 SUPERFAMILY Nucleic acid-binding proteins 19 143 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00186 - - - jcu:105644590 232.646
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00050 Bma15g00186 CCT
Bma01g00050 Bma15g00186 ECH
Bma14g01791 Bma15g00186 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00050 Bma-Chr1:547629 Bma15g00186 Bma-Chr15:1932753 1.02E-75 wgd
Bma14g01791 Bma-Chr14:38500926 Bma15g00186 Bma-Chr15:1932753 1.66E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00186 Bma_Chr15 FPKM 24.852404 25.732029 25.368839 23.320084 27.123745 24.633432 24.208225 17.43689 17.713572 19.139393