Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00187 ATGGCAGCGTTAGCTCCTGGGATTCTGTTGAAGCTTTTGAACGGAATGAATACCGGAATGAAGGCCACGGGTGAGCATCGCAGCTCGCTTCTTCAGGTCACTGACATAGTTCCGGCAGATCTTGATGAGAAAAACCTCTGGCCAAATCACGGTTTCTACCTCAAAGTTACCGATTCTTCTCATTCTATCTACGTCAGTTTACCTTCTGAACAAGACGATTTCGTTCTAAGCAACAAAATGCAGCTGGGTCAGTACATTTATGTTGAAAAACTAGAGCCTGGGTCGCCGGTTCCTGTCATTAGAGGCGCTAAGCTACTTCCGGGACGGCACCCTTTGGTCGGAACGCCTGAGCCGATAACGGGTCTTAGAGAGAAGAGAGAGGAAACTCACAGAAGGGGATCATGGGAGAAAGGGAGGAACGGGGAAGATGTATTTCCGTCGTTTTCATCTCCAATGACCCTGAAGTCTGTTCCTTTGAATTTCGATTACTGTACGCCGGTGAAAGGACGAGGGAAGATCGGAATCGACGGGAGCTCCGGAGGTAGTGTTCGGAGTTCTTACTATGGTGGTGGATTATTGGCTAAAATGGCGGAATCCAAGGGAGAAAGTCCTGGTTTGATGAGGAAAAGCTGCCTCGTTTCTTCATCTGCATCGAAAATTCCCAGAAGCAAGAGTGTTAATGAAAGATATAGAAGGATTCCAATACTTCCCTGCAACTTATCTGAGAGGAAAAGCTCAACTCCACCTCCAAGTTTGAGGAGCGAAAGAGCATCCATTTTCTCAAAAACGGAGGTCGATGCTCAGAAATCTGCAATTCAGCAACCGAAATTGCAATCTCAATCTGGTAACTTAGCCTCCACAGGCAGCACCAGTTTCCCCATGAATTTACCGGGAAAGATTAGCATACTCGGCAAGGAAGCTATGCAGCAGAGCGAAGCAGCTCAGAAGATCGCTCTTCAAGCACTGAGATATGCATCAGCCTCCGACACATTAATTCGATCTCTCAAGTTGTTTTCAAATTTGAGTAAAAACGCAAGAACGGATTCTCCGGCGGCCTGTTTCGACGAATTCTTAGAATTTCATCAGCAAATCGCGCAGGCTCTCACTGATATGTTGTCAATTCAAGCTGTTACTTCAGCCTCAGAAACCGCCATAAACAAACCATCCGAAGCAACGGCACCAATCTTACAGGAAATCACGCACAAACGATCTCCACTGCCCAAATCAGTATCAGAATTCCCCGGAAAACAAGATCAGACGAAGCCGACCCACAGAAAATTTCCAAGAACAGCAACAACAATCGGGGAGAACGACGAAAATAAGAAGCCATCATCATGGCCGGCGAGTTGCTGCAGCTTGGGCAACACGATCAGATTGGGGAAGCAGATCGAAACGGAAGCAGGAAACTGGTTCATGGAGTTTGTGGAGAAGGCATTGGAGAAGGGAATGAAGAGGAGGAGAAGTGGAGAAGAAGATGGTAGTAGAAAAGTTGGACAGTCTCTGATAATCAAAGTGATAAACTGGGTTGAGGTTGAGCAGAGCGATTGCAAGAAGAGGCCTGTTCATCCAAAAGCTGCGCAGATTGCTAGAAAACTAAGGATCAAGATGAAAAACCCATGA 1620 46.6 MAALAPGILLKLLNGMNTGMKATGEHRSSLLQVTDIVPADLDEKNLWPNHGFYLKVTDSSHSIYVSLPSEQDDFVLSNKMQLGQYIYVEKLEPGSPVPVIRGAKLLPGRHPLVGTPEPITGLREKREETHRRGSWEKGRNGEDVFPSFSSPMTLKSVPLNFDYCTPVKGRGKIGIDGSSGGSVRSSYYGGGLLAKMAESKGESPGLMRKSCLVSSSASKIPRSKSVNERYRRIPILPCNLSERKSSTPPPSLRSERASIFSKTEVDAQKSAIQQPKLQSQSGNLASTGSTSFPMNLPGKISILGKEAMQQSEAAQKIALQALRYASASDTLIRSLKLFSNLSKNARTDSPAACFDEFLEFHQQIAQALTDMLSIQAVTSASETAINKPSEATAPILQEITHKRSPLPKSVSEFPGKQDQTKPTHRKFPRTATTIGENDENKKPSSWPASCCSLGNTIRLGKQIETEAGNWFMEFVEKALEKGMKRRRSGEEDGSRKVGQSLIIKVINWVEVEQSDCKKRPVHPKAAQIARKLRIKMKNP 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1937806 1939790 + Bma013169.1 Bma15g00187 96309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00187 539 MobiDBLite consensus disorder prediction 270 291 - -
Bma15g00187 539 PANTHER OS01G0108800 PROTEIN 1 539 - -
Bma15g00187 539 Pfam Plant protein of unknown function (DUF936) 238 390 IPR010341 -
Bma15g00187 539 Pfam Plant protein of unknown function (DUF936) 4 268 IPR010341 -
Bma15g00187 539 PANTHER EXPRESSED PROTEIN 1 539 IPR010341 -
Bma15g00187 539 MobiDBLite consensus disorder prediction 405 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00187 - - - cit:102612188 644.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00051 Bma15g00187 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00472 Bma-Chr7:5715568 Bma15g00187 Bma-Chr15:1937806 1.07E-09 dispersed
Bma09g00872 Bma-Chr9:47811670 Bma15g00187 Bma-Chr15:1937806 2.70E-28 dispersed
Bma09g00878 Bma-Chr9:48005341 Bma15g00187 Bma-Chr15:1937806 7.24E-28 dispersed
Bma11g00499 Bma-Chr11:6210498 Bma15g00187 Bma-Chr15:1937806 4.23E-33 dispersed
Bma02g00967 Bma-Chr2:49810460 Bma15g00187 Bma-Chr15:1937806 5.83E-09 transposed
Bma01g00051 Bma-Chr1:560939 Bma15g00187 Bma-Chr15:1937806 4.50E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g722 Blo01g00397 . Bda01g02223 . . Bpe10g00837 . Bma15g00187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00875 . . . . . Bma01g00051 . . . . . Cma05g00006 . Car05g00005 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009038 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00187 Bma_Chr15 FPKM 43.744141 44.68655 60.165585 55.950577 25.696604 25.596903 22.671202 60.609364 62.280025 58.024578