Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00190 ATGCTGATGAAATCCGAGTTCGTGGCAAATCAGTTCCGAGTTCTGTTCCGATCAATTGCAACGGATCTCGATGTTTTGCCTCTGAATTCGCTCTGCTTGTCTATTGAAGTTACTGAGCTCGTAGAGTTGATCGCTATGCAATCTAGGAAAGCGAGATTTGAGGTTGCGCCGAAAGATGAAGAAGCTTTTTCGGGCTTGAAGTCGATTTTGAATTCGATTGAGGATGCAATTGTTCCTAATAAGAGGGAGCTAAGACGGGTTTTCGATCATTTGGGGATTAAGAAGTGGAGTTTGTGTAACAAGGAAGTGAAATTCTTGGAATCTGAAATGGCATTGGAGTGGTTAAGCAGTGATAATAGAGAGCTTGACTTGCTTAGTAGTTTAATGGCTGTGGCGGCTTATTGCAGAAGCGTGTTATTTGATTTTGTGGATGAAACATTTCGACAAACAGATGGTGGGCACAATAGAACTATTCTCAGAGGTCTGAATCCAGATGACTTTCGATGTCCAATCACTCTAGAATTCATGAATGATCCTGTGACGATCGAAACAGGCCATACCTATGATCGATCTTCGATTAGGAAGTGGTTAAGAGCAGGAAATCCAATCTGTCCCAAAACAGGTGAAAAGCTTATCAGCAAAGAGGCGATTCCTAATTTGGCCTTGAGGAGAATAATTCAGCTTTACTGCATCGAAAACGGCATTGCTCTTCCGAAATCAGGCAACAAAAAGCTGGATATAACCATGACGGTATCGGCCGGAAGTTTAGGAGCCGAGCGAGCTGCAAAAATGGTGGCTGAGTATTTAGCCACCCGGCTTTTGACTGCAACAGAGGAAGGGAAGAACAAGGCGGCATTTGAGATCAGATTACTCTCTAAAAGGAGCATTTTTTACAGATCTTGCATGGTTGAGGCAGGCGTAATTCCAAGCCTTTTAGATCTTCTCCGCTCCTCCGATTCATTGAGCCAGGAAAATTCAAGTGCGGCCCTTTTGAATCTGTCCAAACATTCTACGAGCAAAAGGCAATTAATGGAAAATGATGGGTTGAACTCCATTGTTCACGTCTTGAAGAACGGCAGTAAAGTCGAAGCCAGACAGAATGCTGCCGGAATACTTTTCTACGTTGCCTCGATTGAGAAATATCGGAGGGTAATAGGAGAAAACTACGAAGCCATTCAGGGTCTGATTGATCAGATTCGGAACGGACCCAATCGAAGCAAGAAGAACGCAATGGTAGCCATATTCGGTATACTAATAGAAAGTGAAAACCATAGATTAGTGTTGGAATTTGGATTAATTCCTTTGTTAATCAATCTTTTGGCATCCAAAAACGACTATTTAGCCCTCGATTCACTCGCAATTCTAGCGATTTTATCGGAAAAGCCAGACGGAGCCGCCGAGATACTGCAATCCGGAGGATTGAATTTGTTCATCGGATTAGTTGACACTATCGAATCGAAAGCCGGGAAGGAGTATTGTATCTCATTATTAATCGGTTTGTGCAAATTTGGATGTGAAAACGTAGAAGCTGAGTTAGCCAAGAGCAAATCTCTAATGGGGGCGTTGTATTCGGTACTCGGCCATGGTTCGTCTCGAGCTCGGAAACGGGTAACTTCTCTGATCAGGATCCTCCATCGATATCATGAAAAGAAGTCATCTTTGTCTTCTCCATCTGTGAATCCACTTTCCTCACAAGAATTGTTCATTCATGTAAGATAG 1719 42.93 MLMKSEFVANQFRVLFRSIATDLDVLPLNSLCLSIEVTELVELIAMQSRKARFEVAPKDEEAFSGLKSILNSIEDAIVPNKRELRRVFDHLGIKKWSLCNKEVKFLESEMALEWLSSDNRELDLLSSLMAVAAYCRSVLFDFVDETFRQTDGGHNRTILRGLNPDDFRCPITLEFMNDPVTIETGHTYDRSSIRKWLRAGNPICPKTGEKLISKEAIPNLALRRIIQLYCIENGIALPKSGNKKLDITMTVSAGSLGAERAAKMVAEYLATRLLTATEEGKNKAAFEIRLLSKRSIFYRSCMVEAGVIPSLLDLLRSSDSLSQENSSAALLNLSKHSTSKRQLMENDGLNSIVHVLKNGSKVEARQNAAGILFYVASIEKYRRVIGENYEAIQGLIDQIRNGPNRSKKNAMVAIFGILIESENHRLVLEFGLIPLLINLLASKNDYLALDSLAILAILSEKPDGAAEILQSGGLNLFIGLVDTIESKAGKEYCISLLIGLCKFGCENVEAELAKSKSLMGALYSVLGHGSSRARKRVTSLIRILHRYHEKKSSLSSPSVNPLSSQELFIHVR 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1948368 1950086 - Bma013172.1 Bma15g00190 96312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00190 572 PANTHER U BOX DOMAIN-CONTAINING 1 559 - -
Bma15g00190 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 306 348 IPR000225 GO:0005515
Bma15g00190 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Bma15g00190 572 Gene3D - 419 556 IPR011989 -
Bma15g00190 572 SUPERFAMILY RING/U-box 164 238 - -
Bma15g00190 572 CDD RING-Ubox_PUB 167 209 IPR045210 -
Bma15g00190 572 ProSiteProfiles U-box domain profile. 162 236 IPR003613 GO:0004842|GO:0016567
Bma15g00190 572 Pfam Armadillo/beta-catenin-like repeat 299 334 IPR000225 GO:0005515
Bma15g00190 572 Gene3D - 259 418 IPR011989 -
Bma15g00190 572 SMART Ubox_2 166 229 IPR003613 GO:0004842|GO:0016567
Bma15g00190 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 237 IPR013083 -
Bma15g00190 572 Pfam U-box domain 164 233 IPR003613 GO:0004842|GO:0016567
Bma15g00190 572 SUPERFAMILY ARM repeat 275 559 IPR016024 -
Bma15g00190 572 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 1 559 - -
Bma15g00190 572 SMART arm_5 461 502 IPR000225 GO:0005515
Bma15g00190 572 SMART arm_5 420 460 IPR000225 GO:0005515
Bma15g00190 572 SMART arm_5 294 335 IPR000225 GO:0005515
Bma15g00190 572 SMART arm_5 336 377 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00190 - - - cit:102608641 585.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00208 Bma-Chr6:2493204 Bma15g00190 Bma-Chr15:1948368 2.55E-12 dispersed
Bma14g00979 Bma-Chr14:11398426 Bma15g00190 Bma-Chr15:1948368 4.19E-87 dispersed
Bma15g00190 Bma-Chr15:1948368 Bma14g01592 Bma-Chr14:32906392 1.27E-59 dispersed
Bma15g00190 Bma-Chr15:1948368 Bma11g00122 Bma-Chr11:1154400 1.69E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00190 Bma_Chr15 FPKM 62.785519 67.991722 63.104198 65.97551 30.993662 33.222103 27.835711 65.067741 68.638779 66.93515