Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00191 ATGGCTGCGGAGAGCGTTATCGGGTGTTCGACTGATTTGCCATTGAAGAGGCCGAGGGAAGAGGGTGAGAATGGGTTTTCTGCTCCAATTGTGGCTATGGCGGCGGAGGGGATTGAAGAGCCCGATTGTATTTCCTCTGTTATTCCTGGGTGGTTCTCGGAGGTCAGCCCAATGTGGCCTGGGGAGGCGCATTCCTTGAAGGTTGAGAAGATTTTATTTCAAGGGAAGTCGGACTATCAAAATGTCATGGTTTTTCAGTCGTCGACTTATGGAAAGGTTCTTGTGTTGGATGGGGTGATTCAACTAACTGAGAGAGATGAATGTGCTTACCAAGAAATGATCACCCATCTTCCACTTTGCTCAATTCCAAACCCAAGAAAGGTTTTGGTTATCGGTGGTGGAGATGGTGGAGTGTTACGGGAAGTGTCTCGCCATTCATCTGTCGAACAAATTGACATATGTGAAATTGACAAGATGGTCATTGACGTCTCCAAAAAGTTTTTTCCGGATGTAGCAGTCGGGTATGAAGATCCCAGAGTGAAACTTTTCGTAGGCGATGGAGTTGCATTTTTGAAGGCTGTTCCTGAAGGGACTTACGATGCGATTATAGTCGATTCTTCCGATCCAATAGGACCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTCAGTCGGTGGCAAGGGCTCTTCGGCCGGGAGGTGTCGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCACATTATTGAAGACATCGTCGCAAACTGCCGCCAAATATTCAAAGGCTCAGTTAACTATGCATGGACTACTGTTCCTACTTATCCTAGGTATACTTAA 837 46.24 MAAESVIGCSTDLPLKRPREEGENGFSAPIVAMAAEGIEEPDCISSVIPGWFSEVSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPRKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKKFFPDVAVGYEDPRVKLFVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRYT 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1952578 1954572 + Bma013173.1 Bma15g00191 96313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00191 278 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Bma15g00191 278 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 275 IPR029063 -
Bma15g00191 278 Gene3D Vaccinia Virus protein VP39 102 278 IPR029063 -
Bma15g00191 278 Hamap Polyamine aminopropyltransferase [speE]. 50 278 IPR001045 GO:0003824
Bma15g00191 278 CDD AdoMet_MTases 127 238 - -
Bma15g00191 278 Gene3D Spermidine synthase, tetramerisation domain 42 101 IPR037163 -
Bma15g00191 278 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Bma15g00191 278 TIGRFAM speE: spermidine synthase 51 275 IPR001045 GO:0003824
Bma15g00191 278 Pfam Spermine/spermidine synthase domain 107 276 - -
Bma15g00191 278 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 278 IPR030374 -
Bma15g00191 278 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 275 IPR001045 GO:0003824
Bma15g00191 278 MobiDBLite consensus disorder prediction 1 22 - -
Bma15g00191 278 PANTHER SPERMIDINE SYNTHASE-RELATED 1 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00191 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - egr:104414237 481.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00055 Bma15g00191 CCT
Bma01g00055 Bma15g00191 ECH
Bma14g01785 Bma15g00191 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00894 Bma-Chr6:43820070 Bma15g00191 Bma-Chr15:1952578 4.64E-31 dispersed
Bma01g00913 Bma-Chr1:8850907 Bma15g00191 Bma-Chr15:1952578 3.42E-35 transposed
Bma01g00055 Bma-Chr1:582452 Bma15g00191 Bma-Chr15:1952578 2.69E-154 wgd
Bma14g01767 Bma-Chr14:37981376 Bma15g00191 Bma-Chr15:1952578 1.25E-167 wgd
Bma14g01785 Bma-Chr14:38429261 Bma15g00191 Bma-Chr15:1952578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00191 Bma_Chr15 FPKM 12.726549 13.109956 13.090237 11.668441 14.313531 12.184353 15.925989 11.226659 12.400208 14.640948