Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00199 ATGGCGCCAAAACGAAACAAGAGCCGAAGTTCTTCTCCGGACCCACATGGAATGTTTGCTGGGATGGTCGTTTTCTTAGTCCAAAATGGAGTTCAAGCTCGTCGATTGCAGGTATGGAAGCAAAAGTTGGAGCAGAACGGGGCTAGTATTGAGGAACGCTTTTCAAAAAGCGTCACTCATGTATTAGCAGTGAGCTTGGTTGAGCTTCTCGAGAAACTTAGGATTCTCCTTTATCAATGGCTAGAGGATAGTCTGAGTCTGGGAGAAAAAGTTTCAGAGGATTTATACCATATAAATCTGGATTTCGATATTGTAGATAAACAAGAGAAGTTTTCGGCCCTTAAAACCGATGGTGAAAAGATTGCGAAAGGTAATGAAGTTTTTCGATGTGAAACAGTGAAAGCTGAAATTAGGAATGACTTAAAGTATAATTCTTTGATTATAGCAACATATTCTGCTGAAGGTCCCGAGAAGTCCTTTGATAGTCAAAATCGATCAGATGCTAGCTCCAAGATCCCTGCTGTTATTGATAAGGATGCATCATTGACGTACAGTCCACCTGATATGAACAGAAACATAACTGAGATATTTGGAAAACTTATCAACATTTACAGAGCATTGGGTGATGAAAGAAGATCCTTTAGCTACTACAAGGCTATTCCAGTAATTGAGAAGGTACCATTTAGAATTGAGAGTGCCGACCAAGTCAAAGACCTGCCCGGCATTGGAAAGTCATTGCAGGATCACATTCAGGAGATTGTGGATACGGGGAAATTGTCAAAGTTGGAGCACTTCGGGACAGATGAGAAGGTAAAGACAATCTCCCTATTTGGAGAAATATGGGGCGTTGGTCCTGCCACAGCATTAAAATTATACGATAAAGGGCACCGTACGCTTGATGATTTGAGGAAGGAGGAATCATTAACCAATGCCCAGAAGATAGGGTTGAAATATTTTAATGATCTCCGGCAGAGGATCCCTCGCCATGAGGTTGATATTGTTTGTGGAGGATCATTTAGGCGAGGTAAAGCTTCCTGTGGGGATATGGACATTGTGATTACACATCCTGATGGGAAGAGTCATAAAGGCTTTTTAGCACAATACGTCAAGCATTTAAAGGAGATGAAGTTCTTGAGAGAGGATCTAATCTTTAGCACTCACAGTGAGGAGGGAACTGATTCTGGTGTCGACACGTATTTCGGCCTTTCCACATATCCCGGGCGAGAGCTTAGACACCGTATAGATTTTAAGGTATATCCAAGAGACATATACGCGTATGGGTTGATTGCATGGACGGGAAACGACGTACTAAATAGGCGGCTAAGATTACTAGCAGGATCGAAAGGGTTTCGACTCGACGATACAGGTCTATTTCCCGCGACACACGGGTCTGGGGGTAAAAAGGAGACAGAGAAGTTCAGAAATCATCTTCTAAAGAAGCTATCTAAGAAAGATGTTTACGGCGACTCCGTTGAACAAGTCGTCGGAATTTGCACCGAGATCTTCAGCACATTCTTACACAGTGAGTATGGTGCTCAAGCTTACTATGGATTTCATCCATTGACGGCGTATCTATCCGTTAACTACTTGGATCGGTTCCAAACAAACGGGTGGCATTTGCAACTTTTATCTGTTGCTTGTTTGTCGCTAGCTGCTAAAATGGAGGAGCCTTTGGCTCCTTGTTTATTGGATCTTCAGGTTGAGGGGGCCAAATATGTATTTGAACCCAAAACAGTATGTAGGATGGAGCTTCTTGTCCTCACAGTCCTGGATTGGCGTCTGAGATCCATAACCCCATTCAATTTTATTGATTTCTTTGCCTTCAAGGTTGATCCAACAGGAGCTTTCATTGCATTTCTCATCTCAAGAGCCTCAGAAATTATCGAAAGAATCAACAAATGTTATCGGTTAACACAAGAATCGATGCTTCATGGTAGCTGTAAGAAATCCCCTACAATCTTACCACAGTTTCAAATTAATCTTCAAGCTGAAATGAGGCTGATTGACTCATCACCATCGCCTTCCTCGTCCTCGTCCTCGTCTAGTAAAAGGAGAAAATTGAGTAACTGCTTGTGGGTAGTTAATGGCAAAGGAAACTGA 2100 42.38 MAPKRNKSRSSSPDPHGMFAGMVVFLVQNGVQARRLQVWKQKLEQNGASIEERFSKSVTHVLAVSLVELLEKLRILLYQWLEDSLSLGEKVSEDLYHINLDFDIVDKQEKFSALKTDGEKIAKGNEVFRCETVKAEIRNDLKYNSLIIATYSAEGPEKSFDSQNRSDASSKIPAVIDKDASLTYSPPDMNRNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKVPFRIESADQVKDLPGIGKSLQDHIQEIVDTGKLSKLEHFGTDEKVKTISLFGEIWGVGPATALKLYDKGHRTLDDLRKEESLTNAQKIGLKYFNDLRQRIPRHEVDIVCGGSFRRGKASCGDMDIVITHPDGKSHKGFLAQYVKHLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLSTYPGRELRHRIDFKVYPRDIYAYGLIAWTGNDVLNRRLRLLAGSKGFRLDDTGLFPATHGSGGKKETEKFRNHLLKKLSKKDVYGDSVEQVVGICTEIFSTFLHSEYGAQAYYGFHPLTAYLSVNYLDRFQTNGWHLQLLSVACLSLAAKMEEPLAPCLLDLQVEGAKYVFEPKTVCRMELLVLTVLDWRLRSITPFNFIDFFAFKVDPTGAFIAFLISRASEIIERINKCYRLTQESMLHGSCKKSPTILPQFQINLQAEMRLIDSSPSPSSSSSSSSKRRKLSNCLWVVNGKGN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2027740 2040778 - Bma013181.1 Bma15g00199 96321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00199 699 PANTHER DNA POLYMERASE IV 18 475 - -
Bma15g00199 699 ProSitePatterns DNA polymerase family X signature. 337 356 IPR019843 GO:0016779
Bma15g00199 699 SMART cyclin_7 504 588 IPR013763 -
Bma15g00199 699 CDD NT_POLXc 191 472 IPR002054 GO:0003677|GO:0003887
Bma15g00199 699 Pfam DNA polymerase beta palm 329 420 IPR028207 -
Bma15g00199 699 Gene3D - 596 624 - -
Bma15g00199 699 ProSiteProfiles BRCT domain profile. 14 98 IPR001357 -
Bma15g00199 699 Gene3D BRCT domain 10 100 IPR036420 -
Bma15g00199 699 Pfam Cyclin, N-terminal domain 513 594 IPR006671 -
Bma15g00199 699 SUPERFAMILY BRCT domain 10 99 IPR036420 -
Bma15g00199 699 Gene3D DNA polymerase, thumb domain 430 489 IPR037160 -
Bma15g00199 699 PRINTS DNA-polymerase family X signature 429 442 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X signature 282 299 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X signature 413 422 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 CDD CYCLIN 516 587 IPR013763 -
Bma15g00199 699 SMART BRCT_7 16 88 IPR001357 -
Bma15g00199 699 Pfam Helix-hairpin-helix domain 190 255 IPR010996 -
Bma15g00199 699 Gene3D - 180 266 IPR027421 -
Bma15g00199 699 SUPERFAMILY PsbU/PolX domain-like 268 323 - -
Bma15g00199 699 SMART polxneu3 188 489 IPR002054 GO:0003677|GO:0003887
Bma15g00199 699 SUPERFAMILY Nucleotidyltransferase 329 465 IPR043519 -
Bma15g00199 699 Gene3D - 515 595 - -
Bma15g00199 699 Pfam Fingers domain of DNA polymerase lambda 276 322 IPR018944 GO:0003677|GO:0034061
Bma15g00199 699 Gene3D Beta Polymerase, domain 2 310 429 IPR043519 -
Bma15g00199 699 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 18 475 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 185 264 IPR027421 -
Bma15g00199 699 Pfam DNA polymerase beta thumb 428 467 IPR029398 -
Bma15g00199 699 SUPERFAMILY Cyclin-like 512 594 IPR036915 -
Bma15g00199 699 PRINTS DNA-polymerase family X pol beta-like signature 241 258 IPR002008 GO:0003677|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X pol beta-like signature 313 327 IPR002008 GO:0003677|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00199 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-] - csv:101209170 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00632 Bma15g00199 CCT
Bma01g00063 Bma15g00199 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01747 Bma-Chr14:37599007 Bma15g00199 Bma-Chr15:2027740 1.05E-88 dispersed
Bma15g00199 Bma-Chr15:2027740 Bma01g02590 Bma-Chr1:83529174 3.73E-30 dispersed
Bma01g00063 Bma-Chr1:642030 Bma15g00199 Bma-Chr15:2027740 3.63E-54 wgd
Bma14g01746 Bma-Chr14:37590330 Bma15g00199 Bma-Chr15:2027740 1.36E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g779 . Blo16g01148 Bda01g02234 . . . . Bma15g00199 Cmo04g01665 . . . . . . . . Bhi07g01711 . . . Hepe10g1669 . . Cla05g02516 Cam05g2700 Cec05g2734 Cco05g2768 Clacu05g2703 Cmu05g2557 Cre05g2672 Cone13ag1015 Cone19ag1009 Cone8ag0642 Cone12ag0627 Lsi04g00515 Csa05g02366 . Cme10g00495 . . Bda07g01568 . . . Bma01g00063 Bma06g00632 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010075 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00199 Bma_Chr15 FPKM 5.851845 6.485609 11.783635 11.095097 8.01758 7.601758 8.613337 5.09924 5.260494 5.12299