Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00221 ATGGGGTCGCAATCCTGCTTCGCTCTCACTCTTACTCTTACGCTCTCTGTTAGCTTGGTGTTGGCCGGGAAACGAAACCCGTGTCATTTTCCGGCCATCTTTAACTTTGGGGACTCAAATTCCGACACCGGCGGCTTATCTGCGGTCTTCGGCCAGGCTGGTCCGCCGGCCGGAGAGACGTATTTCCACCATCCTGTTGGCCGGTACACCGACGGCCGACTTATTATCGATTTTATCGCGAAGAGCCTTGGACTACCATATCTAAGCGCCTATCTTGACTCAGTGGGAAGCAACTTCACTCATGGCGCCAACTTTGCCACTGCAGGATCAACCATCAGACCTCAAAACACCACTCTTCAACAAAGTGGGTTCAGTCCCATCTCCTTGAATGTTCAATACAACCAATTCTATGATTTCCGTCGCCGATCCCAAACCACTCGTAAACGAGTAGCGAGATTAGATTTTTCTCAAATTTTTCTTTTTTGTATTGGTATTACTGAAGGTGGAGTTTTTGAGCAGCTCATGCCCAAAGAAGAATCTTTCTTTGAGGGATTGTACACCTTTGATATTGGTCAGAACGACTTGACTGCTGGCTATTTTATGAACTTGTCTACAACCCAAGTAAAAGCTTATGTTCCAGACCTTCTTGATCAGTTCAAAACCATCATTAAGTTGAATCTCCCTTCCAATATTTTTCCAAATGTTGATCTCATGTACGTTGATGACAAAAGATCAGGCCTTGCCAACCAAATCTTTCAAAATGCTTCATCTTCTATGAGGAAAGCTCAGCGAACTTTAAATGACACGTCGAAGATTTGGGTCGCTTCCAATCCTAAAGGTGCAGAAAGATTGCCACCAGGAATTGGTTCAGCTTCGTCAGACTTTTATTTGTGTAGATTATGGGGAAATCCTTGGGAGGATTTAACTATCAAACGGAAGTATCTTGTGACCTTTACTGTTGGCTACAACCAACGAGAAAATATTAATAGAGCAGTGAGAAAGTTTTCAGAGAACTTCACAATTCTTCTATTTCATTATGATGGTCGAACAACGGAATGGGATGAATATGAATGGTCAAACCGAGCTATTCATATTAGTGTTGAGAAGCAAACTAAATGGTGGTACGCCAAGCGATTTTTGCATCCTGATATTGTGGCACCATATGACTACGTATTTATCTGGGATGAAGACCTTGGGGTGGAGCATTTTAATGCGGAAGAGTATGTAAAACTAGCAAGGAAACATTCCCTAGAGATTTCACAGCCTGGTTTAGATCCTAGTAGAGGAACAACATGGCAGATGACAAAGAGAAAAGGTTATAGTGAAGTTCACAAAGTAACAGAGGAAAAACCAGGATGGTGCTCTGATCCACATCTTCCTCCAATGTTTGTTGAAATCATGGCTCCAGTGTTTTCTCGAGATGCATGGCGATGTGTGTGGCATTTGATCCAGAATGACCTAGTCCATGGGTGGGGTCTGGATTTTGCCCTCAGAAGATGTGTAGACCCAGCATATGAGAAAGTAGGAGTTGTAGATACTCAATGGATCGTCCACCAAGCTGTTCCATCACTGGGAAGTCAGGGAGAATCTAAAGACGGGAAGCAACCATGGCAAGGGGTGAGAGAAAGGTGTACTAAGGAATGGACGATATTTCAAAGCCGGCTAGCAAGTGCAGAAACATCATATTTCAAGGAAAGAGGGATCGTTCCCCCAGTCTCAACAAAACACTAG 1731 43.73 MGSQSCFALTLTLTLSVSLVLAGKRNPCHFPAIFNFGDSNSDTGGLSAVFGQAGPPAGETYFHHPVGRYTDGRLIIDFIAKSLGLPYLSAYLDSVGSNFTHGANFATAGSTIRPQNTTLQQSGFSPISLNVQYNQFYDFRRRSQTTRKRVARLDFSQIFLFCIGITEGGVFEQLMPKEESFFEGLYTFDIGQNDLTAGYFMNLSTTQVKAYVPDLLDQFKTIIKLNLPSNIFPNVDLMYVDDKRSGLANQIFQNASSSMRKAQRTLNDTSKIWVASNPKGAERLPPGIGSASSDFYLCRLWGNPWEDLTIKRKYLVTFTVGYNQRENINRAVRKFSENFTILLFHYDGRTTEWDEYEWSNRAIHISVEKQTKWWYAKRFLHPDIVAPYDYVFIWDEDLGVEHFNAEEYVKLARKHSLEISQPGLDPSRGTTWQMTKRKGYSEVHKVTEEKPGWCSDPHLPPMFVEIMAPVFSRDAWRCVWHLIQNDLVHGWGLDFALRRCVDPAYEKVGVVDTQWIVHQAVPSLGSQGESKDGKQPWQGVRERCTKEWTIFQSRLASAETSYFKERGIVPPVSTKH 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2183216 2190413 - Bma013205.1 Bma15g00221 96343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00221 576 Gene3D SGNH hydrolase 22 240 IPR036514 -
Bma15g00221 576 PANTHER OS06G0731900 PROTEIN 222 568 IPR007877 -
Bma15g00221 576 PANTHER LYSINE KETOGLUTARATE REDUCTASE TRANS-SPLICING PROTEIN 222 568 - -
Bma15g00221 576 Pfam Protein of unknown function (DUF707) 276 560 IPR007877 -
Bma15g00221 576 Pfam GDSL-like Lipase/Acylhydrolase 33 225 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00221 - - - pvy:116134631 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00552 Bma-Chr13:11705955 Bma15g00221 Bma-Chr15:2183216 0 dispersed
Bma15g00071 Bma-Chr15:836922 Bma15g00221 Bma-Chr15:2183216 2.79E-74 dispersed
Bma15g00221 Bma-Chr15:2183216 Bma02g00603 Bma-Chr2:13642651 1.47E-73 dispersed
Bma06g01173 Bma-Chr6:48863624 Bma15g00221 Bma-Chr15:2183216 5.36E-40 transposed
Bma13g00253 Bma-Chr13:3973859 Bma15g00221 Bma-Chr15:2183216 4.09E-36 transposed
Bma14g01287 Bma-Chr14:23349087 Bma15g00221 Bma-Chr15:2183216 2.20E-41 transposed
Bma14g01351 Bma-Chr14:25088063 Bma15g00221 Bma-Chr15:2183216 5.17E-38 transposed
Bma01g00034 Bma-Chr1:419685 Bma15g00221 Bma-Chr15:2183216 1.51E-150 wgd
Bma14g01823 Bma-Chr14:39156858 Bma15g00221 Bma-Chr15:2183216 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g632 . . . . . . . Bma15g00221 . Cmo18g00764 . Cma18g00759 . Car18g00692 Sed04g0578 Cpe09g00538 . Bhi07g01798 Tan04g0156 Cmetu10g1157 . Hepe10g1584 . . Cla05g02593 Cam05g2784 Cec05g2821 . Clacu05g2786 Cmu05g2634 Cre05g2750 . . . . Lsi04g00602 . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000341 6 5 4 6 6 4 7 3 4 4 4 4 6 3 3 7 4 6 5 4 4 4 4 3 3 3 4 8 3 3 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00221 Bma_Chr15 FPKM 13.802913 17.31295 16.272429 15.751106 10.65761 10.679236 10.760942 18.868603 21.52714 20.0375